RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 RIMS1Q86UR5 1692 aaKnown RBP10.18□□□□□ -0.78
GGA3-223ENST00000621870 SMIM23A6NLE4 172 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 PSMD14O00487 310 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 MED14O60244 1454 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 SNX16P57768 344 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 TFDP1Q14186 410 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 PDIA6Q15084 440 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 MIS18BP1Q6P0N0 1132 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 INTS5Q6P9B9 1019 aaKnown RBP10.18□□□□□ -0.78
GGA3-223ENST00000621870 KMT5AQ9NQR1 393 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 HESX1Q9UBX0 185 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 DIP2AQ14689 1571 aa10.18□□□□□ -0.78
GGA3-223ENST00000621870 KCNJ18B7U540 433 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 hCG_1984214I3L0E3 225 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 STAT3P40763 770 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 CALCOCO2Q13137 446 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 MORC3Q14149 939 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 KCNJ12Q14500 433 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 QRICH1Q2TAL8 776 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 SFMBT2Q5VUG0 894 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 RCSD1Q6JBY9 416 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 ZNF713Q8N859 430 aaPredicted RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 GOLGA5Q8TBA6 731 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 LSM14BQ9BX40 385 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 ARFGAP3Q9NP61 516 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 CLIC2O15247 247 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 NR2F2P24468 414 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 ADKP55263 362 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 IRX5P78411 483 aaPredicted RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 MRPS9P82933 396 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 RNASELQ05823 741 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 CYP26C1Q6V0L0 522 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 NEDD1Q8NHV4 660 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 IPO4Q8TEX9 1081 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 PAIP2Q9BPZ3 127 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 RIOK1Q9BRS2 568 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 GPBP1L1Q9HC44 474 aaPredicted RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 POLD4Q9HCU8 107 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.17□□□□□ -0.782e-10■■■□□ 18.4
GGA3-223ENST00000621870 QRICH2Q9H0J4 1663 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 ERICH4A6NGS2 130 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 LAD1O00515 517 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 ZNF75DP51815 510 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 CUL4AQ13619 759 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 CTTNQ14247 550 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 C12orf60Q5U649 245 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 LINC00301Q8NCQ3 95 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 NLRP7Q8WX94 980 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 MED10Q9BTT4 135 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 PCIF1Q9H4Z3 704 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 ZNF215Q9UL58 517 aaPredicted RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 CAPN9O14815 690 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 TFAMQ00059 246 aaKnown RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 PPP2R5DQ14738 602 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 SPECC1LQ69YQ0 1117 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 PIGOQ8TEQ8 1089 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 DCAF4Q8WV16 495 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 EPSTI1Q96J88 318 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 AK8Q96MA6 479 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 OSBPL5Q9H0X9 879 aaPredicted RBP10.17□□□□□ -0.78
GGA3-223ENST00000621870 POLR3EQ9NVU0 708 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 SUGT1Q9Y2Z0 365 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 SETBP1Q9Y6X0 1596 aa10.17□□□□□ -0.78
GGA3-223ENST00000621870 GNA14O95837 355 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 LACTBP83111 547 aaPredicted RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 TAF1CQ15572 869 aaPredicted RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 STXBP2Q15833 593 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 RSBN1LQ6PCB5 846 aaPredicted RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 TMED8Q6PL24 325 aaPredicted RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 GBP6Q6ZN66 633 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 TMTC1Q8IUR5 882 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 CEP112Q8N8E3 955 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 OR8K1Q8NGG5 319 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 U2AF1L4Q8WU68 220 aaKnown RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 TRERF1Q96PN7 1200 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 METTL14Q9HCE5 456 aaKnown RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 PCDHA6Q9UN73 950 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 PCDHA8Q9Y5H6 950 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 FAM169AQ9Y6X4 670 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 SLU7O95391 586 aaKnown RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 HUNKP57058 714 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 PTPROQ16827 1216 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 KIAA1841Q6NSI8 718 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 NSUN6Q8TEA1 469 aaKnown RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 TRIM31Q9BZY9 425 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 MTFR1LQ9H019 292 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 DEFB129Q9H1M3 183 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 FAM204AQ9H8W3 233 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 STIM2Q9P246 746 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 HACL1Q9UJ83 578 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 E7EVH7 732 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 TNPO2O14787 897 aaKnown RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 CEP104O60308 925 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 VAV2P52735 878 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 TNNC1P63316 161 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 MTMR1Q13613 665 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 BMS1Q14692 1282 aaKnown RBP10.16□□□□□ -0.78
GGA3-223ENST00000621870 ZNF365Q70YC5 407 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 TMEM39BQ9GZU3 492 aa10.16□□□□□ -0.78
GGA3-223ENST00000621870 MYO3AQ8NEV4 1616 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms