RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 FBXO28Q9NVF7 368 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 PNMA2Q9UL42 364 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 PCDHA4Q9UN74 947 aa13.1□□□□□ -0.31
SLIRP-212ENST00000613856 BTBD18B2RXH4 712 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 M0R2N6 131 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 FLOT1O75955 427 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 HOXA7P31268 230 aaPredicted RBP13.09□□□□□ -0.31
SLIRP-212ENST00000613856 GNL2Q13823 731 aaKnown RBP13.09□□□□□ -0.31
SLIRP-212ENST00000613856 MYSM1Q5VVJ2 828 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 BLIDQ8IZY5 108 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 BICD2Q8TD16 824 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 PORCNQ9H237 461 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 SLC38A10Q9HBR0 1119 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 C6orf50Q9HD87 102 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 PNMA3Q9UL41 463 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 ADAMTS5Q9UNA0 930 aa13.09□□□□□ -0.31
SLIRP-212ENST00000613856 ICAM1P05362 532 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 CAPN2P17655 700 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 DSG3P32926 999 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 GCLCP48506 637 aaPredicted RBP13.08□□□□□ -0.32
SLIRP-212ENST00000613856 ADCY7P51828 1080 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 OAZ1P54368 228 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 KRT85P78386 507 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 DNM1Q05193 864 aaKnown RBP13.08□□□□□ -0.32
SLIRP-212ENST00000613856 Q3C1V9 767 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 TMEM87AQ8NBN3 555 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 OXER1Q8TDS5 423 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 ZNF396Q96N95 335 aaPredicted RBP13.08□□□□□ -0.32
SLIRP-212ENST00000613856 P2RX7Q99572 595 aaKnown RBP13.08□□□□□ -0.32
SLIRP-212ENST00000613856 RIC8AQ9NPQ8 531 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 MORF4L1Q9UBU8 362 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 PCDHA1Q9Y5I3 950 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 ABCB11O95342 1321 aa13.08□□□□□ -0.32
SLIRP-212ENST00000613856 SMCO2A6NFE2 343 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 DDX11L8A8MPP1 907 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 GOLGA6L22H0YM25 854 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 VWA5AO00534 786 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 MCM4P33991 863 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 NR5A1Q13285 461 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 PABPC4Q13310 644 aaKnown RBP eCLIP13.07□□□□□ -0.323e-8■□□□□ 8.6
SLIRP-212ENST00000613856 COG2Q14746 738 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 LBX2Q6XYB7 198 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 REXO1Q8N1G1 1221 aaKnown RBP13.07□□□□□ -0.32
SLIRP-212ENST00000613856 REPS2Q8NFH8 660 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 USP6NLQ92738 828 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 CUL5Q93034 780 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 CDX2Q99626 313 aaPredicted RBP13.07□□□□□ -0.32
SLIRP-212ENST00000613856 FLRT1Q9NZU1 646 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 RAPGEFL1Q9UHV5 662 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 MYH7BA7E2Y1 1941 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 ZNF536O15090 1300 aa13.07□□□□□ -0.32
SLIRP-212ENST00000613856 SPDYE16A6NNV3 312 aaPredicted RBP13.06□□□□□ -0.32
SLIRP-212ENST00000613856 ATP2A1O14983 1001 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 ZBED4O75132 1171 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 PTMSP20962 102 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 TRAPPC10P48553 1259 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 CLK2P49760 499 aaKnown RBP13.06□□□□□ -0.32
SLIRP-212ENST00000613856 MRPL12P52815 198 aaKnown RBP13.06□□□□□ -0.32
SLIRP-212ENST00000613856 ATN1P54259 1190 aaPredicted RBP13.06□□□□□ -0.32
SLIRP-212ENST00000613856 SNAP25P60880 206 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 CSPP1Q1MSJ5 1256 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 RILPL1Q5EBL4 403 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 C9orf50Q5SZB4 431 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 MCTP2Q6DN12 878 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 FAM109BQ6ICB4 259 aaPredicted RBP13.06□□□□□ -0.32
SLIRP-212ENST00000613856 FAM173BQ6P4H8 233 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 CCDC174Q6PII3 467 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 KRT25Q7Z3Z0 450 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 MYLIPQ8WY64 445 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 ATG4CQ96DT6 458 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 SCAND2PQ9GZW5 306 aaPredicted RBP13.06□□□□□ -0.32
SLIRP-212ENST00000613856 POLR3EQ9NVU0 708 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 HOXC10Q9NYD6 342 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 RBPJLQ9UBG7 517 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 CFAP45Q9UL16 551 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 PCDHA6Q9UN73 950 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 PCDHA8Q9Y5H6 950 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 ELP1O95163 1332 aa13.06□□□□□ -0.32
SLIRP-212ENST00000613856 PIK3CDO00329 1044 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 NASPP49321 788 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-212ENST00000613856 HERVK_113P62684 666 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 GHRHRQ02643 423 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 SHHQ15465 462 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 NFKBIBQ15653 356 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 FOXD4L6Q3SYB3 417 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-212ENST00000613856 USH1GQ495M9 461 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 MORN1Q5T089 497 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 FOXD4L3Q6VB84 417 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-212ENST00000613856 MB21D1Q8N884 522 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 MAFAQ8NHW3 353 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-212ENST00000613856 CHAMP1Q96JM3 812 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 USP28Q96RU2 1077 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 NUDT12Q9BQG2 462 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 SENP6Q9GZR1 1112 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-212ENST00000613856 MAF1Q9H063 256 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 TTYH1Q9H313 450 aaPredicted RBP13.05□□□□□ -0.32
SLIRP-212ENST00000613856 PSTPIP2Q9H939 334 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 PRDM6Q9NQX0 595 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 RTEL1Q9NZ71 1219 aa13.05□□□□□ -0.32
SLIRP-212ENST00000613856 CCPG1Q9ULG6 757 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms