RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 MNX1P50219 401 aaPredicted RBP22.3■■□□□ 1.16
UPF1-212ENST00000601689 GJA9P57773 515 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 TTLL4Q14679 1199 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 ANKRD1Q15327 319 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 SLC35G1Q2M3R5 365 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 GNASQ5JWF2 1037 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 HEATR3Q7Z4Q2 680 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 TLK2Q86UE8 772 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 FCHSD1Q86WN1 690 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 PXMP2Q9NR77 195 aa22.3■■□□□ 1.16
UPF1-212ENST00000601689 TNRC18O15417 2968 aaPredicted RBP22.29■■□□□ 1.16
UPF1-212ENST00000601689 EIF3JO75822 258 aaKnown RBP22.29■■□□□ 1.16
UPF1-212ENST00000601689 HOXA13P31271 388 aaPredicted RBP22.29■■□□□ 1.16
UPF1-212ENST00000601689 TAPT1Q6NXT6 567 aa22.29■■□□□ 1.16
UPF1-212ENST00000601689 TEX2Q8IWB9 1127 aa22.29■■□□□ 1.16
UPF1-212ENST00000601689 VTI1AQ96AJ9 217 aa22.29■■□□□ 1.16
UPF1-212ENST00000601689 GLT1D1Q96MS3 346 aa22.29■■□□□ 1.16
UPF1-212ENST00000601689 UPF3BQ9BZI7 483 aaKnown RBP22.29■■□□□ 1.16
UPF1-212ENST00000601689 GLT8D2Q9H1C3 349 aa22.29■■□□□ 1.16
UPF1-212ENST00000601689 PSTPIP2Q9H939 334 aa22.29■■□□□ 1.16
UPF1-212ENST00000601689 EHMT1Q9H9B1 1298 aa22.29■■□□□ 1.16
UPF1-212ENST00000601689 CPLX1O14810 134 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 DYNC1LI2O43237 492 aaPredicted RBP22.28■■□□□ 1.16
UPF1-212ENST00000601689 ADAMTS4O75173 837 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 NR3C2P08235 984 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 CST5P28325 142 aaPredicted RBP22.28■■□□□ 1.16
UPF1-212ENST00000601689 DUSP28Q4G0W2 176 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 KCNV1Q6PIU1 500 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 CCDC12Q8WUD4 166 aaPredicted RBP22.28■■□□□ 1.16
UPF1-212ENST00000601689 PDGFCQ9NRA1 345 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 PHF24Q9UPV7 400 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 V9GY48 417 aaPredicted RBP22.28■■□□□ 1.16
UPF1-212ENST00000601689 CNTNAP5Q8WYK1 1306 aa22.28■■□□□ 1.16
UPF1-212ENST00000601689 TXNP10599 105 aaKnown RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 MYCLP12524 364 aaPredicted RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 CCND2P30279 289 aa22.27■■□□□ 1.16
UPF1-212ENST00000601689 ATN1P54259 1190 aaPredicted RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 NAPAP54920 295 aa22.27■■□□□ 1.16
UPF1-212ENST00000601689 KCNA10Q16322 511 aa22.27■■□□□ 1.16
UPF1-212ENST00000601689 PPP1R18Q6NYC8 613 aa22.27■■□□□ 1.16
UPF1-212ENST00000601689 LENG1Q96BZ8 264 aaPredicted RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 ZNF274Q96GC6 653 aaPredicted RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 UPF3AQ9H1J1 476 aaKnown RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 UPF2Q9HAU5 1272 aaKnown RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 STARD7Q9NQZ5 370 aa22.27■■□□□ 1.16
UPF1-212ENST00000601689 COL20A1Q9P218 1284 aa22.27■■□□□ 1.16
UPF1-212ENST00000601689 PRKAG2Q9UGJ0 569 aa22.27■■□□□ 1.16
UPF1-212ENST00000601689 GNEQ9Y223 722 aaKnown RBP22.27■■□□□ 1.16
UPF1-212ENST00000601689 KIAA1217Q5T5P2 1943 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.26■■□□□ 1.15
UPF1-212ENST00000601689 RBM47A0AV96 593 aaKnown RBP22.26■■□□□ 1.15
UPF1-212ENST00000601689 SPDYE3A6NKU9 549 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 PIK3CDO00329 1044 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 OPLAHO14841 1288 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 STAM2O75886 525 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 SMPD1P17405 629 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 ADD1P35611 737 aaKnown RBP22.26■■□□□ 1.15
UPF1-212ENST00000601689 CPT1AP50416 773 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 EVCP57679 992 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 GNPTABQ3T906 1256 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 SLC39A5Q6ZMH5 540 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 SEPT14Q6ZU15 432 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 TRIM22Q8IYM9 498 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 C7orf61Q8IZ16 206 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 KLHDC9Q8NEP7 349 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 FERMT2Q96AC1 680 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 PDCD2LQ9BRP1 358 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 LRRC37A2A6NM11 1700 aa22.26■■□□□ 1.15
UPF1-212ENST00000601689 hCG_1642624A0A1W2PR95 340 aa22.25■■□□□ 1.15
UPF1-212ENST00000601689 CABYRO75952 493 aa22.25■■□□□ 1.15
UPF1-212ENST00000601689 PDIA3P30101 505 aaKnown RBP22.25■■□□□ 1.15
UPF1-212ENST00000601689 CDC27P30260 824 aa22.25■■□□□ 1.15
UPF1-212ENST00000601689 ACLYP53396 1101 aa22.25■■□□□ 1.15
UPF1-212ENST00000601689 FSCN1Q16658 493 aaKnown RBP22.25■■□□□ 1.15
UPF1-212ENST00000601689 OR6J1Q8NGC5 347 aa22.25■■□□□ 1.15
UPF1-212ENST00000601689 NID2Q14112 1375 aa22.25■■□□□ 1.15
UPF1-212ENST00000601689 A0A1W2PQ45 241 aaPredicted RBP22.24■■□□□ 1.15
UPF1-212ENST00000601689 A0A1W2PQY0 241 aa22.24■■□□□ 1.15
UPF1-212ENST00000601689 ASGR1P07306 291 aa22.24■■□□□ 1.15
UPF1-212ENST00000601689 NKX3-2P78367 333 aa22.24■■□□□ 1.15
UPF1-212ENST00000601689 CCT2P78371 535 aaKnown RBP22.24■■□□□ 1.15
UPF1-212ENST00000601689 PGM5Q15124 567 aa22.24■■□□□ 1.15
UPF1-212ENST00000601689 MRVI1Q9Y6F6 885 aa22.24■■□□□ 1.15
UPF1-212ENST00000601689 DDX49Q9Y6V7 483 aaKnown RBP22.24■■□□□ 1.15
UPF1-212ENST00000601689 MROH7Q68CQ1 1323 aa22.24■■□□□ 1.15
UPF1-212ENST00000601689 CDKL5O76039 1030 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 TOB2Q14106 344 aaPredicted RBP22.23■■□□□ 1.15
UPF1-212ENST00000601689 LRRC26Q2I0M4 334 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 XRRA1Q6P2D8 792 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 VSIG10LQ86VR7 867 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 GPKOWQ92917 476 aaPredicted RBP eCLIP22.23■■□□□ 1.15
UPF1-212ENST00000601689 RNF26Q9BY78 433 aaPredicted RBP22.23■■□□□ 1.15
UPF1-212ENST00000601689 SEZ6LQ9BYH1 1024 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 SLKQ9H2G2 1235 aaPredicted RBP22.23■■□□□ 1.15
UPF1-212ENST00000601689 FAM217BQ9NTX9 383 aaPredicted RBP22.23■■□□□ 1.15
UPF1-212ENST00000601689 POLR3EQ9NVU0 708 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 BARHL2Q9NY43 387 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 ATP11BQ9Y2G3 1177 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 ELP1O95163 1332 aa22.23■■□□□ 1.15
UPF1-212ENST00000601689 ADCY6O43306 1168 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms