RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 VTI1AQ96AJ9 217 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 WNT8AQ9H1J5 351 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 LY9Q9HBG7 655 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 MTMR10Q9NXD2 777 aa12.43□□□□□ -0.42
VRK3-214ENST00000598553 ADD3Q9UEY8 706 aaKnown RBP12.43□□□□□ -0.42
VRK3-214ENST00000598553 SORBS3O60504 671 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 RGS20O76081 388 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 PLEKHA8P1O95397 391 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 MYL3P08590 195 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 CSF2RAP15509 400 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 EIF2AK2P19525 551 aaKnown RBP12.42□□□□□ -0.42
VRK3-214ENST00000598553 PURAQ00577 322 aaKnown RBP12.42□□□□□ -0.42
VRK3-214ENST00000598553 PDE4DQ08499 809 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 WTAPQ15007 396 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 TMEM67Q5HYA8 995 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 CCDC62Q6P9F0 684 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 SEPT14Q6ZU15 432 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 GPKOWQ92917 476 aaPredicted RBP eCLIP12.42□□□□□ -0.42
VRK3-214ENST00000598553 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.42□□□□□ -0.42
VRK3-214ENST00000598553 AP5M1Q9H0R1 490 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 TTYH1Q9H313 450 aaPredicted RBP12.42□□□□□ -0.42
VRK3-214ENST00000598553 RIOX1Q9H6W3 641 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 SPC25Q9HBM1 224 aa12.42□□□□□ -0.42
VRK3-214ENST00000598553 TRMT13Q9NUP7 481 aaKnown RBP12.42□□□□□ -0.42
VRK3-214ENST00000598553 GRXCR1A8MXD5 290 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 DCDC2CA8MYV0 355 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 SH2B2O14492 632 aaPredicted RBP12.41□□□□□ -0.42
VRK3-214ENST00000598553 ZBTB5O15062 677 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 CFBP00751 764 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 TIMP1P01033 207 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 HSD17B4P51659 736 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 FPGSQ05932 587 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 PPP2R5BQ15173 497 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 NECTIN1Q15223 517 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 LY6KQ17RY6 165 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 CREB3L3Q68CJ9 461 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 RALYLQ86SE5 291 aaKnown RBP12.41□□□□□ -0.42
VRK3-214ENST00000598553 ZNF654Q8IZM8 581 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 DNERQ8NFT8 737 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 TCEANC2Q96MN5 208 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 BCAS3Q9H6U6 928 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 PXMP2Q9NR77 195 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 TELO2Q9Y4R8 837 aa12.41□□□□□ -0.42
VRK3-214ENST00000598553 PRC1O43663 620 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 TXNP10599 105 aaKnown RBP12.4□□□□□ -0.42
VRK3-214ENST00000598553 CYP2C9P11712 490 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 CCL23P55773 120 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 GHRHRQ02643 423 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 ARHGAP1Q07960 439 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 TRDNQ13061 729 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 ADCK5Q3MIX3 580 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 TMEM240Q5SV17 173 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 MFSD5Q6N075 450 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 RASEFQ8IZ41 740 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 RGS22Q8NE09 1264 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 AFG1LQ8WV93 481 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 SCLYQ96I15 445 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 RNPC3Q96LT9 517 aaKnown RBP12.4□□□□□ -0.42
VRK3-214ENST00000598553 CTAGE1Q96RT6 745 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 RMDN3Q96TC7 470 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 NOC4LQ9BVI4 516 aaKnown RBP12.4□□□□□ -0.42
VRK3-214ENST00000598553 AMNQ9BXJ7 453 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 CXXC1Q9P0U4 656 aaPredicted RBP12.4□□□□□ -0.42
VRK3-214ENST00000598553 MRPL11Q9Y3B7 192 aaKnown RBP12.4□□□□□ -0.42
VRK3-214ENST00000598553 Q9Y3F1 56 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 PCDHA1Q9Y5I3 950 aa12.4□□□□□ -0.42
VRK3-214ENST00000598553 SIP14410 1827 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 LOC102724159A0A0B4J2E5 919 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 hCG_1642624A0A1W2PR95 340 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 MMP3P08254 477 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 PBX2P40425 430 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 PWP2Q15269 919 aaKnown RBP12.39□□□□□ -0.43
VRK3-214ENST00000598553 BMP2KLQ5H9B9 411 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 CENPQQ7L2Z9 268 aaPredicted RBP12.39□□□□□ -0.43
VRK3-214ENST00000598553 SRBD1Q8N5C6 995 aaKnown RBP12.39□□□□□ -0.43
VRK3-214ENST00000598553 SCFD2Q8WU76 684 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 KAT2BQ92831 832 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 PDCD2LQ9BRP1 358 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 ALDH8A1Q9H2A2 487 aaPredicted RBP12.39□□□□□ -0.43
VRK3-214ENST00000598553 ANO2Q9NQ90 1003 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 PNMA2Q9UL42 364 aa12.39□□□□□ -0.43
VRK3-214ENST00000598553 MROH7Q68CQ1 1323 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 NR3C2P08235 984 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 MYCLP12524 364 aaPredicted RBP12.38□□□□□ -0.43
VRK3-214ENST00000598553 CPA1P15085 419 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 SP2Q02086 613 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 HIC1Q14526 733 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 PGM5Q15124 567 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 NBPF20Q3BBV1 942 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 RASIP1Q5U651 963 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 ARHGEF16Q5VV41 709 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 GPR153Q6NV75 609 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 ZNF365Q70YC5 407 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 FCHSD1Q86WN1 690 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 HIPK3Q9H422 1215 aa12.38□□□□□ -0.43
VRK3-214ENST00000598553 DDX41Q9UJV9 622 aaKnown RBP12.38□□□□□ -0.43
VRK3-214ENST00000598553 LAMA2P24043 3122 aaKnown RBP12.38□□□□□ -0.43
VRK3-214ENST00000598553 A6NJR5 290 aa12.37□□□□□ -0.43
VRK3-214ENST00000598553 ZNF286BP0CG31 522 aa12.37□□□□□ -0.43
VRK3-214ENST00000598553 SEMA3FQ13275 785 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms