RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 DUSP28Q4G0W2 176 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 RUFY3Q7L099 469 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 EEPD1Q7L9B9 569 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 BRF1Q92994 677 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 RMDN3Q96TC7 470 aa18.66■□□□□ 0.58
TRIM28-213ENST00000598355 SENP6Q9GZR1 1112 aaPredicted RBP18.66■□□□□ 0.58
TRIM28-213ENST00000598355 SEC63Q9UGP8 760 aaKnown RBP18.66■□□□□ 0.58
TRIM28-213ENST00000598355 GOLGA8AA7E2F4 631 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 GOLGA8BA8MQT2 603 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 B4DLN1 442 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 PIK3CDO00329 1044 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 MRPL12P52815 198 aaKnown RBP18.65■□□□□ 0.58
TRIM28-213ENST00000598355 ANAPC15P60006 121 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 IRX5P78411 483 aaPredicted RBP18.65■□□□□ 0.58
TRIM28-213ENST00000598355 PDE4DQ08499 809 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 APOBRQ0VD83 1088 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 TLK2Q86UE8 772 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 PDCD2LQ9BRP1 358 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 NR2E3Q9Y5X4 410 aa18.65■□□□□ 0.58
TRIM28-213ENST00000598355 A0A1W2PQ45 241 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-213ENST00000598355 A0A1W2PQY0 241 aa18.64■□□□□ 0.57
TRIM28-213ENST00000598355 ACLYP53396 1101 aa18.64■□□□□ 0.57
TRIM28-213ENST00000598355 TOB2Q14106 344 aaPredicted RBP18.64■□□□□ 0.57
TRIM28-213ENST00000598355 TMEM63BQ5T3F8 832 aa18.64■□□□□ 0.57
TRIM28-213ENST00000598355 SCFD2Q8WU76 684 aa18.64■□□□□ 0.57
TRIM28-213ENST00000598355 PRO3102Q9H379 93 aa18.64■□□□□ 0.57
TRIM28-213ENST00000598355 TRIOBPQ9H2D6 2365 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 GCOM1H8Y6P7 765 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-213ENST00000598355 MEIS2O14770 477 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 C6orf222P0C671 652 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-213ENST00000598355 POLR2MP0CAP2 368 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 PTGS1P23219 599 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 HOXA13P31271 388 aaPredicted RBP18.63■□□□□ 0.57
TRIM28-213ENST00000598355 KCNA10Q16322 511 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 CCDC62Q6P9F0 684 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 SLC39A5Q6ZMH5 540 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 TEX2Q8IWB9 1127 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 PCSK9Q8NBP7 692 aaKnown RBP18.63■□□□□ 0.57
TRIM28-213ENST00000598355 PIBF1Q8WXW3 757 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 WDR11Q9BZH6 1224 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 SPC25Q9HBM1 224 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 DOCK5Q9H7D0 1870 aa18.63■□□□□ 0.57
TRIM28-213ENST00000598355 NKRFO15226 690 aaKnown RBP eCLIP18.62■□□□□ 0.57
TRIM28-213ENST00000598355 EIF5BO60841 1220 aaKnown RBP18.62■□□□□ 0.57
TRIM28-213ENST00000598355 ARIH2O95376 493 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 NR3C2P08235 984 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 EIF2AK2P19525 551 aaKnown RBP18.62■□□□□ 0.57
TRIM28-213ENST00000598355 METAP2P50579 478 aaKnown RBP eCLIP18.62■□□□□ 0.571e-8■□□□□ 8.9
TRIM28-213ENST00000598355 FGD1P98174 961 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 PGM5Q15124 567 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 STXBP2Q15833 593 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 ARHGEF16Q5VV41 709 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 C7orf61Q8IZ16 206 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 IL31RAQ8NI17 732 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 CYP46A1Q9Y6A2 500 aa18.62■□□□□ 0.57
TRIM28-213ENST00000598355 ELP1O95163 1332 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 CCDC196A0A1B0GTZ2 297 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 hCG_1984214I3L0E3 225 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 RGS20O76081 388 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 ASGR1P07306 291 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 RTP1P59025 263 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 NTRK3Q16288 839 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 FSCN1Q16658 493 aaKnown RBP18.61■□□□□ 0.57
TRIM28-213ENST00000598355 WWC2Q6AWC2 1192 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 TYW1BQ6NUM6 668 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 PPP1R18Q6NYC8 613 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 VSIG10LQ86VR7 867 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 CCDC82Q8N4S0 544 aa18.61■□□□□ 0.57
TRIM28-213ENST00000598355 ZNF713Q8N859 430 aaPredicted RBP18.61■□□□□ 0.57
TRIM28-213ENST00000598355 UPF3BQ9BZI7 483 aaKnown RBP18.61■□□□□ 0.57
TRIM28-213ENST00000598355 hCG_1642624A0A1W2PR95 340 aa18.6■□□□□ 0.57
TRIM28-213ENST00000598355 EIF3JO75822 258 aaKnown RBP18.6■□□□□ 0.57
TRIM28-213ENST00000598355 MYCNP04198 464 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-213ENST00000598355 PDIA3P30101 505 aaKnown RBP18.6■□□□□ 0.57
TRIM28-213ENST00000598355 ADD1P35611 737 aaKnown RBP18.6■□□□□ 0.57
TRIM28-213ENST00000598355 ATN1P54259 1190 aaPredicted RBP18.6■□□□□ 0.57
TRIM28-213ENST00000598355 TTLL4Q14679 1199 aa18.6■□□□□ 0.57
TRIM28-213ENST00000598355 C8orf34Q49A92 452 aa18.6■□□□□ 0.57
TRIM28-213ENST00000598355 GNASQ5JWF2 1037 aa18.6■□□□□ 0.57
TRIM28-213ENST00000598355 FERMT2Q96AC1 680 aa18.6■□□□□ 0.57
TRIM28-213ENST00000598355 DYNC1LI2O43237 492 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-213ENST00000598355 SEC24BO95487 1268 aa18.59■□□□□ 0.57
TRIM28-213ENST00000598355 BEX3Q00994 111 aa18.59■□□□□ 0.57
TRIM28-213ENST00000598355 TRIM60Q495X7 471 aa18.59■□□□□ 0.57
TRIM28-213ENST00000598355 GPKOWQ92917 476 aaPredicted RBP eCLIP18.59■□□□□ 0.57
TRIM28-213ENST00000598355 AP5M1Q9H0R1 490 aa18.59■□□□□ 0.57
TRIM28-213ENST00000598355 ALDH8A1Q9H2A2 487 aaPredicted RBP18.59■□□□□ 0.57
TRIM28-213ENST00000598355 STARD7Q9NQZ5 370 aa18.59■□□□□ 0.57
TRIM28-213ENST00000598355 STXBP3O00186 592 aa18.58■□□□□ 0.56
TRIM28-213ENST00000598355 USP17L6PQ6QN14 398 aa18.58■□□□□ 0.56
TRIM28-213ENST00000598355 NOL8Q76FK4 1167 aaKnown RBP18.58■□□□□ 0.56
TRIM28-213ENST00000598355 ANKRD33Q7Z3H0 272 aa18.58■□□□□ 0.56
TRIM28-213ENST00000598355 HEATR3Q7Z4Q2 680 aa18.58■□□□□ 0.56
TRIM28-213ENST00000598355 FCHSD1Q86WN1 690 aa18.58■□□□□ 0.56
TRIM28-213ENST00000598355 SLC43A3Q8NBI5 491 aa18.58■□□□□ 0.56
TRIM28-213ENST00000598355 EMID1Q96A84 441 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-213ENST00000598355 ZNF274Q96GC6 653 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-213ENST00000598355 GLT1D1Q96MS3 346 aa18.58■□□□□ 0.56
TRIM28-213ENST00000598355 INPP4AQ96PE3 977 aaPredicted RBP18.58■□□□□ 0.56
TRIM28-213ENST00000598355 BARHL2Q9NY43 387 aa18.58■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms