RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SETDB2Q96T68 719 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 PSD3Q9NYI0 1048 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 MYH10P35580 1976 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 F8W031 263 aaPredicted RBP16.94■□□□□ 0.3
UPF1-204ENST00000596842 MCM3P25205 808 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 SLC35G1Q2M3R5 365 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 SV2BQ7L1I2 683 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 GPCPD1Q9NPB8 672 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 PARP4Q9UKK3 1724 aaKnown RBP16.94■□□□□ 0.3
UPF1-204ENST00000596842 ZNF804BA4D1E1 1349 aa16.94■□□□□ 0.3
UPF1-204ENST00000596842 TAF1P21675 1872 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 LIG3P49916 1009 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 VAV2P52735 878 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 IQCEQ6IPM2 695 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 WDR93Q6P2C0 686 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 A0A1W2PQC6 194 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 ECM2O94769 699 aaPredicted RBP16.93■□□□□ 0.3
UPF1-204ENST00000596842 FTCDO95954 541 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 MAP2K2P36507 400 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 SH2D3CQ8N5H7 860 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 ALS2CR12Q96Q35 445 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 NDST4Q9H3R1 872 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 KBTBD4Q9NVX7 518 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 ZSCAN5CA6NGD5 496 aaPredicted RBP16.93■□□□□ 0.3
UPF1-204ENST00000596842 TRAF5O00463 557 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 AMPD3Q01432 767 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 CCNI2Q6ZMN8 369 aaPredicted RBP16.93■□□□□ 0.3
UPF1-204ENST00000596842 LRRC47Q8N1G4 583 aaKnown RBP16.93■□□□□ 0.3
UPF1-204ENST00000596842 DHTKD1Q96HY7 919 aaPredicted RBP16.93■□□□□ 0.3
UPF1-204ENST00000596842 C6orf50Q9HD87 102 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 ARHGAP20Q9P2F6 1191 aa16.93■□□□□ 0.3
UPF1-204ENST00000596842 MYH13Q9UKX3 1938 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 SLIT2O94813 1529 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 RASSF10A6NK89 507 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 TUBBP07437 444 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 NEK8Q86SG6 692 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 BCAS4Q8TDM0 211 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 NUP58Q9BVL2 599 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 SEMA6BQ9H3T3 888 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 LRP6O75581 1613 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 STXBP3O00186 592 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 EPS15P42566 896 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 GNAQP50148 359 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 C8orf74Q6P047 294 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 KIAA0895Q8NCT3 520 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 SNX29Q8TEQ0 813 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 EYA3Q99504 573 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 BARHL2Q9NY43 387 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 NUP98P52948 1817 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 TDP2O95551 362 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 GNGT1P63211 74 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 PAPD7Q5XG87 772 aaKnown RBP16.92■□□□□ 0.3
UPF1-204ENST00000596842 CNNM4Q6P4Q7 775 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 ZBTB12Q9Y330 459 aaPredicted RBP16.92■□□□□ 0.3
UPF1-204ENST00000596842 ZNF142P52746 1687 aaPredicted RBP16.92■□□□□ 0.3
UPF1-204ENST00000596842 UBR2Q8IWV8 1755 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 MYH3P11055 1940 aa16.92■□□□□ 0.3
UPF1-204ENST00000596842 CCDC91Q7Z6B0 441 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 MARCH10Q8NA82 808 aaPredicted RBP16.91■□□□□ 0.3
UPF1-204ENST00000596842 SPATA4Q8NEY3 305 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 TRIM58Q8NG06 486 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 KCNG1Q9UIX4 513 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 FECHP22830 423 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 CALCRLQ16602 461 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 C12orf60Q5U649 245 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 REXO1Q8N1G1 1221 aaKnown RBP16.91■□□□□ 0.3
UPF1-204ENST00000596842 SLC1A4P43007 532 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 RAPGEF1Q13905 1077 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 KCNB1Q14721 858 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 FBXO33Q7Z6M2 555 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 OSBPL9Q96SU4 736 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 GOLPH3Q9H4A6 298 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 SNX12Q9UMY4 172 aa16.91■□□□□ 0.3
UPF1-204ENST00000596842 MYMKA6NI61 221 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 KRT18P05783 430 aaKnown RBP16.9■□□□□ 0.3
UPF1-204ENST00000596842 KLHL7Q8IXQ5 586 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 BAG3O95817 575 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 KRT14P02533 472 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 PCP11498 1178 aaKnown RBP16.9■□□□□ 0.3
UPF1-204ENST00000596842 HLTFQ14527 1009 aaKnown RBP eCLIP16.9■□□□□ 0.3
UPF1-204ENST00000596842 UBE2SQ16763 222 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 VWA3BQ502W6 1294 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 MIIPQ5JXC2 388 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 SF3A3Q12874 501 aaKnown RBP eCLIP16.9■□□□□ 0.37e-7■■■■□ 22.9
UPF1-204ENST00000596842 DGKHQ86XP1 1220 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 NUDT12Q9BQG2 462 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 CCSER1Q9C0I3 900 aa16.9■□□□□ 0.3
UPF1-204ENST00000596842 GNPATO15228 680 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 POLR2FP61218 127 aaKnown RBP16.89■□□□□ 0.29
UPF1-204ENST00000596842 GUCY2DQ02846 1103 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 PDCLQ13371 301 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 GRM4Q14833 912 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 CCDC170Q8IYT3 715 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 SALL4Q9UJQ4 1053 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 NFU1Q9UMS0 254 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 DCCP43146 1447 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 TOGARAM1Q9Y4F4 1720 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 USP17L5A8MUK1 530 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 HSF2BPO75031 334 aa16.89■□□□□ 0.29
UPF1-204ENST00000596842 GNA11P29992 359 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms