RNA–Protein interactions for RNA: ENST00000595523.5

SHKBP1-206, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-206ENST00000595523 A0A1W2PQY0 241 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 C6orf222P0C671 652 aaPredicted RBP12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 EIF2AK2P19525 551 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 ACLYP53396 1101 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 RCAN1P53805 252 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 BEX3Q00994 111 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 PDE4DQ08499 809 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 KCNA10Q16322 511 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 RTN1Q16799 776 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 DUSP28Q4G0W2 176 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 IQSEC1Q6DN90 963 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 SLC39A5Q6ZMH5 540 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 TLK2Q86UE8 772 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 IL31RAQ8NI17 732 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 NSUN6Q8TEA1 469 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 TSEN34Q9BSV6 310 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 ZSWIM6Q9HCJ5 1215 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 PXMP2Q9NR77 195 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 MAP3K20Q9NYL2 800 aaKnown RBP12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 NR2E3Q9Y5X4 410 aa12.71□□□□□ -0.37
SHKBP1-206ENST00000595523 FRMPD4Q14CM0 1322 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 GOLGA8AA7E2F4 631 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 GOLGA8BA8MQT2 603 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 ARIH2O95376 493 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 SEC24BO95487 1268 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 PSMA5P28066 241 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 RTP1P59025 263 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 TRAF1Q13077 416 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 TOB2Q14106 344 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 SYNE3Q6ZMZ3 975 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 RUFY3Q7L099 469 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 SAMD3Q8N6K7 520 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 IWS1Q96ST2 819 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 PDCD2LQ9BRP1 358 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 WDR11Q9BZH6 1224 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 TM6SF1Q9BZW5 370 aa12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 RBM28Q9NW13 759 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 SEC63Q9UGP8 760 aaKnown RBP12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 ZMYND8Q9ULU4 1186 aaPredicted RBP12.7□□□□□ -0.38
SHKBP1-206ENST00000595523 MOXD2PA6NHM9 499 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 GCOM1H8Y6P7 765 aaPredicted RBP12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 MEIS2O14770 477 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 RGS20O76081 388 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 ASGR1P07306 291 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 NR3C2P08235 984 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 POLR2MP0CAP2 368 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 SYN1P17600 705 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 ADD1P35611 737 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 EVCP57679 992 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 PGM5Q15124 567 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 TRIM60Q495X7 471 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 GNASQ5JWF2 1037 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 C1orf53Q5VUE5 145 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 ARHGEF16Q5VV41 709 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 TYW1BQ6NUM6 668 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 CCDC62Q6P9F0 684 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 USP17L6PQ6QN14 398 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 NOL8Q76FK4 1167 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 COPS5Q92905 334 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 GPKOWQ92917 476 aaPredicted RBP eCLIP12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 UPF3BQ9BZI7 483 aaKnown RBP12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 PRO3102Q9H379 93 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 Q9Y3F1 56 aa12.69□□□□□ -0.38
SHKBP1-206ENST00000595523 B4DLN1 442 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 PIK3CDO00329 1044 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 DYNC1LI2O43237 492 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 METAP2P50579 478 aaKnown RBP eCLIP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 MRPL12P52815 198 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 FGD1P98174 961 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 STXBP2Q15833 593 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 FSCN1Q16658 493 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 WWC2Q6AWC2 1192 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 VSIG10LQ86VR7 867 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 FCHSD1Q86WN1 690 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 PCSK9Q8NBP7 692 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 SCFD2Q8WU76 684 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 MPHOSPH6Q99547 160 aaKnown RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 SPC25Q9HBM1 224 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 NAP1L2Q9ULW6 460 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 COLQQ9Y215 455 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 ATP11BQ9Y2G3 1177 aa12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 TRIP12Q14669 1992 aaPredicted RBP12.68□□□□□ -0.38
SHKBP1-206ENST00000595523 EIF3JO75822 258 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 TXNP10599 105 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 PDIA3P30101 505 aaKnown RBP12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 PPP2R5BQ15173 497 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 NTRK3Q16288 839 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 CXCL17Q6UXB2 119 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 CHRDL2Q6WN34 429 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 SEPT14Q6ZU15 432 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 IL17RAQ96F46 866 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 ZFP91Q96JP5 570 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 AP5M1Q9H0R1 490 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 STARD7Q9NQZ5 370 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 CYP46A1Q9Y6A2 500 aa12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 V9GY48 417 aaPredicted RBP12.67□□□□□ -0.38
SHKBP1-206ENST00000595523 ELP1O95163 1332 aa12.66□□□□□ -0.38
SHKBP1-206ENST00000595523 MYCLP12524 364 aaPredicted RBP12.66□□□□□ -0.38
SHKBP1-206ENST00000595523 CDK7P50613 346 aa12.66□□□□□ -0.38
SHKBP1-206ENST00000595523 MRPS9P82933 396 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms