RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 USP17L8P0C7I0 530 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 PRDX5P30044 214 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 SIK1P57059 783 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 ITPK1Q13572 414 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 C2CD5Q86YS7 1000 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 MLXIPQ9HAP2 919 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 A0A087WUV0 522 aaPredicted RBP16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 OPA1O60313 960 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 MOCS3O95396 460 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 EPHB4P54760 987 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 EMBQ6PCB8 327 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 KRT25Q7Z3Z0 450 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 LZTS2Q9BRK4 669 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 NDST4Q9H3R1 872 aa16.5■□□□□ 0.23
SMARCA4-219ENST00000592604 KLRK1P26718 216 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 HIBADHP31937 336 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 EIF4A3P38919 411 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 ALS2CLQ60I27 953 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 CCDC84Q86UT8 332 aaPredicted RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 CELF1Q92879 486 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 ALS2CR12Q96Q35 445 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 MMTAG2Q9BU76 263 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 EPHB6O15197 1021 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 CAVIN3Q969G5 261 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 CAPS2Q9BXY5 557 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 ROBO3Q96MS0 1386 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 LOC102724159A0A0B4J2E5 919 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 PWP2Q15269 919 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 MAN2A1Q16706 1144 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 HAUS3Q68CZ6 603 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 CCDC155Q8N6L0 562 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 RRP36Q96EU6 259 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 STIM2Q9P246 746 aa16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 COL14A1Q05707 1796 aaKnown RBP16.49■□□□□ 0.23
SMARCA4-219ENST00000592604 ORC2Q13416 577 aaPredicted RBP16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 NONOQ15233 471 aaKnown RBP eCLIP16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 ASTE1Q2TB18 679 aaPredicted RBP16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 NFRKBQ6P4R8 1299 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 EDEM3Q9BZQ6 932 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 GEMIN8Q9NWZ8 242 aaKnown RBP16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 WNK3Q9BYP7 1800 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 PVALEFA0A1B0GWK0 134 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 A6NNZ2 444 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 ANKRD65E5RJM6 399 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 AKR1B10O60218 316 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 TUBB8Q3ZCM7 444 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 GLE1Q53GS7 698 aaKnown RBP16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 SLC10A5Q5PT55 438 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 TADA2BQ86TJ2 420 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 BAP1Q92560 729 aa16.48■□□□□ 0.23
SMARCA4-219ENST00000592604 EIF3HO15372 352 aaKnown RBP eCLIP16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 CCNT1O60563 726 aaKnown RBP16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 FGFR1OPO95684 399 aaKnown RBP16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 HOXA7P31268 230 aaPredicted RBP16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 MAGEA1P43355 309 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 SKOR1P84550 965 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 NNTQ13423 1086 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 LETM2Q2VYF4 491 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 CALML4Q96GE6 196 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 SPZ1Q9BXG8 430 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 DEF6Q9H4E7 631 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 SLC39A2Q9NP94 309 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 FAM207AQ9NSI2 230 aaPredicted RBP16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 GRIN2DO15399 1336 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 USP17L3A6NCW0 530 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 USP17L4A6NCW7 530 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 PAFAH1B1P43034 410 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 ARHGAP27Q6ZUM4 889 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 UNC13DQ70J99 1090 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 USP17L1Q7RTZ2 530 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 NEK8Q86SG6 692 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 GUF1Q8N442 669 aaKnown RBP16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 RNF10Q8N5U6 811 aaKnown RBP16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 HPS3Q969F9 1004 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 DYNLL2Q96FJ2 89 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 HINFPQ9BQA5 517 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 TLR10Q9BXR5 811 aa16.47■□□□□ 0.23
SMARCA4-219ENST00000592604 SSU72P8A0A1W2PR75 194 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 LRRC53A6NM62 1247 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 EBAG9O00559 213 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 TECP42680 631 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 SLC7A5Q01650 507 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 CCDC181Q5TID7 509 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 FOXR2Q6PJQ5 311 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 SV2BQ7L1I2 683 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 DRC1Q96MC2 740 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 TMEM47Q9BQJ4 181 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 PLCD4Q9BRC7 762 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 MKNK2Q9HBH9 465 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 RNF14Q9UBS8 474 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 SALL4Q9UJQ4 1053 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 CLSTN1O94985 981 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 GNA11P29992 359 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 CCT5P48643 541 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 ICE2Q659A1 982 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 TSEN2Q8NCE0 465 aaKnown RBP16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 MMRN2Q9H8L6 949 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 BLOC1S4Q9NUP1 217 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 TFCP2L1Q9NZI6 479 aa16.46■□□□□ 0.23
SMARCA4-219ENST00000592604 STK17AQ9UEE5 414 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms