RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 FSCN1Q16658 493 aaKnown RBP12.24□□□□□ -0.45
VPS4B-207ENST00000591519 RASIP1Q5U651 963 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 SYDE2Q5VT97 1194 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 B4GALNT3Q6L9W6 998 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 MFSD6Q6ZSS7 791 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 TLK2Q86UE8 772 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 DGKHQ86XP1 1220 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 PLEKHM2Q8IWE5 1019 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 ZBED2Q9BTP6 218 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 AP5M1Q9H0R1 490 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 PDGFCQ9NRA1 345 aa12.24□□□□□ -0.45
VPS4B-207ENST00000591519 ADD3Q9UEY8 706 aaKnown RBP12.24□□□□□ -0.45
VPS4B-207ENST00000591519 GRIN2DO15399 1336 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 TRIM6-TRIM34B2RNG4 842 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 ZEB2O60315 1214 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 IGHDP01880 384 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 NUCB1Q02818 461 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 ZNF543Q08ER8 600 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 ITGA7Q13683 1181 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 CCDC96Q2M329 555 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 DUSP28Q4G0W2 176 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 RRP12Q5JTH9 1297 aaKnown RBP12.23□□□□□ -0.45
VPS4B-207ENST00000591519 TMEM240Q5SV17 173 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 CXCL17Q6UXB2 119 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 NSMFQ6X4W1 530 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 NOL8Q76FK4 1167 aaKnown RBP12.23□□□□□ -0.45
VPS4B-207ENST00000591519 CHD1LQ86WJ1 897 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 TMEM199Q8N511 208 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 RGS22Q8NE09 1264 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 CLEC4DQ8WXI8 215 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 ANKS1AQ92625 1134 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 ZDHHC16Q969W1 377 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 RILPL2Q969X0 211 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 PURBQ96QR8 312 aaKnown RBP12.23□□□□□ -0.45
VPS4B-207ENST00000591519 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.23□□□□□ -0.45
VPS4B-207ENST00000591519 MAF1Q9H063 256 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 RNF41Q9H4P4 317 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-207ENST00000591519 TOMM22Q9NS69 142 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 MTMR7Q9Y216 660 aa12.23□□□□□ -0.45
VPS4B-207ENST00000591519 WDR19Q8NEZ3 1342 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 NFIBO00712 420 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 ZNF213O14771 459 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 CSF2RAP15509 400 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 ALDH5A1P51649 535 aaPredicted RBP12.22□□□□□ -0.45
VPS4B-207ENST00000591519 HAND2P61296 217 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 MFSD10Q14728 455 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 TMEM63BQ5T3F8 832 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 GPATCH4Q5T3I0 446 aaKnown RBP12.22□□□□□ -0.45
VPS4B-207ENST00000591519 KIAA1211Q6ZU35 1233 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.22□□□□□ -0.45
VPS4B-207ENST00000591519 ESR2Q92731 530 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 SLC4A5Q9BY07 1137 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 GPCPD1Q9NPB8 672 aa12.22□□□□□ -0.45
VPS4B-207ENST00000591519 DDX49Q9Y6V7 483 aaKnown RBP12.22□□□□□ -0.45
VPS4B-207ENST00000591519 LCTP09848 1927 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 FRMPD2Q68DX3 1309 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-207ENST00000591519 EDNRBP24530 442 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 CCDC178Q5BJE1 867 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 RNF207Q6ZRF8 634 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 ZNF365Q70YC5 407 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 EEPD1Q7L9B9 569 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 TBC1D10CQ8IV04 446 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 FBXO16Q8IX29 292 aaPredicted RBP12.21□□□□□ -0.45
VPS4B-207ENST00000591519 DNERQ8NFT8 737 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 WDR11Q9BZH6 1224 aa12.21□□□□□ -0.45
VPS4B-207ENST00000591519 BHMG1C9JSJ3 638 aaPredicted RBP12.2□□□□□ -0.46
VPS4B-207ENST00000591519 PTGS1P23219 599 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 DNAJB2P25686 324 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 CYP2C18P33260 490 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 RPS6P62753 249 aaKnown RBP12.2□□□□□ -0.46
VPS4B-207ENST00000591519 MAFAQ8NHW3 353 aaPredicted RBP12.2□□□□□ -0.46
VPS4B-207ENST00000591519 MYLIPQ8WY64 445 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 HERVK_113Q902F9 699 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 IL23AQ9NPF7 189 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 CUL9Q8IWT3 2517 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 LRRC37A2A6NM11 1700 aa12.2□□□□□ -0.46
VPS4B-207ENST00000591519 PTPDC1A2A3K4 754 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 HIP1O00291 1037 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 NKRFO15226 690 aaKnown RBP eCLIP12.19□□□□□ -0.46
VPS4B-207ENST00000591519 GRIN2CQ14957 1233 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 PSRC1Q6PGN9 363 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-207ENST00000591519 CWC27Q6UX04 472 aaKnown RBP12.19□□□□□ -0.46
VPS4B-207ENST00000591519 SLC30A10Q6XR72 485 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 IQCA1Q86XH1 822 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 DSCC1Q9BVC3 393 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 NOC4LQ9BVI4 516 aaKnown RBP12.19□□□□□ -0.46
VPS4B-207ENST00000591519 COL25A1Q9BXS0 654 aaPredicted RBP12.19□□□□□ -0.46
VPS4B-207ENST00000591519 PPP1R12CQ9BZL4 782 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 HIPK3Q9H422 1215 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 ZNF576Q9H609 170 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 POLR3EQ9NVU0 708 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 ZSWIM5Q9P217 1185 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 UNC80Q8N2C7 3258 aa12.19□□□□□ -0.46
VPS4B-207ENST00000591519 NEDD4P46934 1319 aa12.18□□□□□ -0.46
VPS4B-207ENST00000591519 A6NJR5 290 aa12.18□□□□□ -0.46
VPS4B-207ENST00000591519 B4DLN1 442 aa12.18□□□□□ -0.46
VPS4B-207ENST00000591519 B4GALT4O60513 344 aa12.18□□□□□ -0.46
VPS4B-207ENST00000591519 KPNA6O60684 536 aa12.18□□□□□ -0.46
VPS4B-207ENST00000591519 KDM4AO75164 1064 aa12.18□□□□□ -0.46
VPS4B-207ENST00000591519 FGBP02675 491 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms