RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CCSAP	Q6IQ19	270 aa	Predicted RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	C7orf61	Q8IZ16	206 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	FBXL16	Q8N461	479 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	FERMT2	Q96AC1	680 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	IWS1	Q96ST2	819 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	TSEN34	Q9BSV6	310 aa	Known RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	UPF3A	Q9H1J1	476 aa	Known RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	RBM28	Q9NW13	759 aa	Known RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	NAP1L2	Q9ULW6	460 aa	Predicted RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	PHF24	Q9UPV7	400 aa		10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	GNE	Q9Y223	722 aa	Known RBP	10.63	□□□□□ -0.71
DNMT1-223	ENST00000591239	ALPK3	Q96L96	1907 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	LRRC37A2	A6NM11	1700 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	hCG_1642624	A0A1W2PR95	340 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	RBM47	A0AV96	593 aa	Known RBP	10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	GOLGA8A	A7E2F4	631 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	GOLGA8B	A8MQT2	603 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	GCOM1	H8Y6P7	765 aa	Predicted RBP	10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	POLR2M	P0CAP2	368 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	EIF2AK2	P19525	551 aa	Known RBP	10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	PTGS1	P23219	599 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	CST5	P28325	142 aa	Predicted RBP	10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	ACLY	P53396	1101 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	RCAN1	P53805	252 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	NKX3-2	P78367	333 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	DUSP28	Q4G0W2	176 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	GNAS	Q5JWF2	1037 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	TMEM63B	Q5T3F8	832 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	SLC39A5	Q6ZMH5	540 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	RUFY3	Q7L099	469 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	TLK2	Q86UE8	772 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	BRF1	Q92994	677 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	AGXT2	Q9BYV1	514 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	WDR11	Q9BZH6	1224 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	TM6SF1	Q9BZW5	370 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	AP5M1	Q9H0R1	490 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	ZSWIM6	Q9HCJ5	1215 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	PXMP2	Q9NR77	195 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239		Q9Y3F1	56 aa		10.62	□□□□□ -0.71
DNMT1-223	ENST00000591239		A0A1W2PQ45	241 aa	Predicted RBP	10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239		A0A1W2PQY0	241 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	MOXD2P	A6NHM9	499 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	CTAGE5	O15320	804 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	DYNC1LI2	O43237	492 aa	Predicted RBP	10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	NR3C2	P08235	984 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	CDC27	P30260	824 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	ADD1	P35611	737 aa	Known RBP	10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	METAP2	P50579	478 aa	Known RBP eCLIP	10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	FUT2	Q10981	343 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	PPP2R5B	Q15173	497 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	STXBP2	Q15833	593 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	PCSK9	Q8NBP7	692 aa	Known RBP	10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	SCFD2	Q8WU76	684 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	CYP46A1	Q9Y6A2	500 aa		10.61	□□□□□ -0.71
DNMT1-223	ENST00000591239	CNTNAP5	Q8WYK1	1306 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	CCDC196	A0A1B0GTZ2	297 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	EIF5B	O60841	1220 aa	Known RBP	10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	ABCB7	O75027	752 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	EIF3J	O75822	258 aa	Known RBP	10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	ASGR1	P07306	291 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	RTP1	P59025	263 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	BEX3	Q00994	111 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	SNX17	Q15036	470 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	FSCN1	Q16658	493 aa	Known RBP	10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	C1orf53	Q5VUE5	145 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	SEPT14	Q6ZU15	432 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	FCHSD1	Q86WN1	690 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	PDCD2L	Q9BRP1	358 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	UPF3B	Q9BZI7	483 aa	Known RBP	10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	ATP11B	Q9Y2G3	1177 aa		10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239		V9GY48	417 aa	Predicted RBP	10.6	□□□□□ -0.71
DNMT1-223	ENST00000591239	LAMA3	Q16787	3333 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	PIK3CD	O00329	1044 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	MEIS2	O14770	477 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	NKRF	O15226	690 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	ARIH2	O95376	493 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	TXN	P10599	105 aa	Known RBP	10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	MYCL	P12524	364 aa	Predicted RBP	10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	SYN1	P17600	705 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	PDIA3	P30101	505 aa	Known RBP	10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	EVC	P57679	992 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	ANAPC15	P60006	121 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	TOB2	Q14106	344 aa	Predicted RBP	10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	TTLL4	Q14679	1199 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	PGM5	Q15124	567 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	TRIM60	Q495X7	471 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	CCDC62	Q6P9F0	684 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	USP17L6P	Q6QN14	398 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	HEATR3	Q7Z4Q2	680 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	VSIG10L	Q86VR7	867 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	OR6J1	Q8NGC5	347 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	CUL5	Q93034	780 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	VTI1A	Q96AJ9	217 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	GLT1D1	Q96MS3	346 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	PSTPIP2	Q9H939	334 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	STARD7	Q9NQZ5	370 aa		10.59	□□□□□ -0.71
DNMT1-223	ENST00000591239	NID2	Q14112	1375 aa		10.59	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 15 ms