RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	USP2	O75604	605 aa	Predicted RBP	17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	SARS	P49591	514 aa	Known RBP	17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	BACE1	P56817	501 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	KANK3	Q6NY19	840 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	PDXDC2P	Q6P474	469 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	ZNF280C	Q8ND82	737 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	CCSER1	Q9C0I3	900 aa		17.35	■□□□□ 0.37
DDX39A-209	ENST00000589318	PTPRF	P10586	1907 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	ADM5	C9JUS6	153 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	TRAF1	Q13077	416 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	CALCRL	Q16602	461 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	IGSF22	Q8N9C0	903 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	PRPF38A	Q8NAV1	312 aa	Known RBP	17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	PAGE5	Q96GU1	130 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	SLF1	Q9BQI6	1058 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	PICK1	Q9NRD5	415 aa		17.34	■□□□□ 0.37
DDX39A-209	ENST00000589318	SCN4A	P35499	1836 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	TNNT1	P13805	278 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	GCFC2	P16383	781 aa	Known RBP	17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	BMP6	P22004	513 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	HOXA13	P31271	388 aa	Predicted RBP	17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	USP11	P51784	963 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	USP14	P54578	494 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	KARS	Q15046	597 aa	Known RBP	17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	MCTP2	Q6DN12	878 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	DPY19L2	Q6NUT2	758 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	LDHD	Q86WU2	507 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	TEX2	Q8IWB9	1127 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	DHX40	Q8IX18	779 aa	Known RBP	17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	TBC1D5	Q92609	795 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	DCPS	Q96C86	337 aa	Known RBP	17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	AK8	Q96MA6	479 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	MBOAT7	Q96N66	472 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	MTR	Q99707	1265 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	AS3MT	Q9HBK9	375 aa		17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	HOOK1	Q9UJC3	728 aa	Known RBP	17.33	■□□□□ 0.37
DDX39A-209	ENST00000589318	CYP3A7-CYP3A51P	A0A087WV96	503 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	FOS	P01100	380 aa	Predicted RBP	17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	CYP3A7	P24462	503 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	SREBF1	P36956	1147 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	FXR2	P51116	673 aa	Known RBP eCLIP	17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	NAALADL2	Q58DX5	795 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	ISM2	Q6H9L7	571 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	CEP57L1	Q8IYX8	460 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	IQUB	Q8NA54	791 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	LRRC15	Q8TF66	581 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	HAS1	Q92839	578 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	C12orf42	Q96LP6	360 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	DISC1	Q9NRI5	854 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	DDX25	Q9UHL0	483 aa	Known RBP	17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	ZHX2	Q9Y6X8	837 aa		17.33	■□□□□ 0.36
DDX39A-209	ENST00000589318	ZC3H4	Q9UPT8	1303 aa	Known RBP	17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	ICAM1	P05362	532 aa		17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	TEC	P42680	631 aa		17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	ARHGAP4	P98171	946 aa		17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	PRKG1	Q13976	671 aa		17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	GPR162	Q16538	588 aa		17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	SAMD1	Q6SPF0	538 aa	Predicted RBP	17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	SULF1	Q8IWU6	871 aa		17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	PYM1	Q9BRP8	204 aa	Known RBP	17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	MMTAG2	Q9BU76	263 aa	Known RBP	17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	RPAP3	Q9H6T3	665 aa	Predicted RBP	17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	MAN1B1	Q9UKM7	699 aa		17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	COL11A1	P12107	1806 aa	Predicted RBP	17.32	■□□□□ 0.36
DDX39A-209	ENST00000589318	GLTPD2	A6NH11	291 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	CASP1	P29466	404 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	TXLNA	P40222	546 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	TXK	P42681	527 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	AFM	P43652	599 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	MOXD1	Q6UVY6	613 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	USP50	Q70EL3	339 aa	Predicted RBP	17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	AGBL1	Q96MI9	1066 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	NAP1L4	Q99733	375 aa	Known RBP	17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	BPIFA3	Q9BQP9	254 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	TANGO6	Q9C0B7	1094 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	SLC38A10	Q9HBR0	1119 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	PPP1R9A	Q9ULJ8	1098 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	MRPL11	Q9Y3B7	192 aa	Known RBP	17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	SNCAIP	Q9Y6H5	919 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	ABCB11	O95342	1321 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	RBBP6	Q7Z6E9	1792 aa	Known RBP	17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	KIF2A	O00139	706 aa	Predicted RBP	17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	EPHX2	P34913	555 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	UBA7	P41226	1012 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	DPYD	Q12882	1025 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	ZRSR1	Q15695	479 aa	Known RBP	17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	KRT26	Q7Z3Y9	468 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	ERO1A	Q96HE7	468 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	KCNMB3	Q9NPA1	279 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	AFG3L2	Q9Y4W6	797 aa		17.31	■□□□□ 0.36
DDX39A-209	ENST00000589318	SPDYE3	A6NKU9	549 aa		17.3	■□□□□ 0.36
DDX39A-209	ENST00000589318	FLOT1	O75955	427 aa		17.3	■□□□□ 0.36
DDX39A-209	ENST00000589318	CFB	P00751	764 aa		17.3	■□□□□ 0.36
DDX39A-209	ENST00000589318	HMGCS2	P54868	508 aa		17.3	■□□□□ 0.36
DDX39A-209	ENST00000589318	VGLL4	Q14135	290 aa		17.3	■□□□□ 0.36
DDX39A-209	ENST00000589318	SMARCE1	Q969G3	411 aa		17.3	■□□□□ 0.36
DDX39A-209	ENST00000589318	LENG9	Q96B70	501 aa		17.3	■□□□□ 0.36
DDX39A-209	ENST00000589318	POTEC	B2RU33	542 aa		17.29	■□□□□ 0.36
DDX39A-209	ENST00000589318	C19orf81	C9J6K1	198 aa		17.29	■□□□□ 0.36

Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms