RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 PRNPP04156 253 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 RAB33AQ14088 237 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 CEP128Q6ZU80 1094 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 DHRS1Q96LJ7 313 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 DIRC2Q96SL1 478 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 G6PC3Q9BUM1 346 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 LRP2BPQ9P2M1 347 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 EID1Q9Y6B2 187 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 ARHGAP23Q9P227 1491 aa4.43□□□□□ -1.7
ZNF540-207ENST00000589285 LCP1P13796 627 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 SCRN1Q12765 414 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 LAPTM5Q13571 262 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 CC2D1BQ5T0F9 858 aaKnown RBP4.42□□□□□ -1.7
ZNF540-207ENST00000589285 CCDC103Q8IW40 242 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 PRAM1Q96QH2 718 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 KRTAP4-8Q9BYQ9 185 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 ASCC2Q9H1I8 757 aaPredicted RBP4.42□□□□□ -1.7
ZNF540-207ENST00000589285 CLEC1BQ9P126 229 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 ZMYM5Q9UJ78 669 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 TMEM59LQ9UK28 342 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 VAV3Q9UKW4 847 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 TNRQ92752 1358 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 SUSD5O60279 629 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 EIF5BO60841 1220 aaKnown RBP4.42□□□□□ -1.7
ZNF540-207ENST00000589285 FBLN1P23142 703 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 KIR3DL1P43629 444 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 CASP7P55210 303 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 SGPP1Q9BX95 441 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 SLC12A9Q9BXP2 914 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 PHAXQ9H814 394 aaKnown RBP4.42□□□□□ -1.7
ZNF540-207ENST00000589285 SIT1Q9Y3P8 196 aa4.42□□□□□ -1.7
ZNF540-207ENST00000589285 CLTCQ00610 1675 aaKnown RBP4.42□□□□□ -1.7
ZNF540-207ENST00000589285 VAV1P15498 845 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 L1CAMP32004 1257 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 ECI1P42126 302 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 C21orf62-AS1Q17RA5 79 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 THEMISQ8N1K5 641 aaPredicted RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 GPR62Q9BZJ7 368 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 GULP1Q9UBP9 304 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 AKT3Q9Y243 479 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 R3HCC1Q9Y3T6 440 aaKnown RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 RWDD3Q9Y3V2 267 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 MROH1Q8NDA8 1641 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 RPRD2Q5VT52 1461 aaKnown RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 USP47Q96K76 1375 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 ALKQ9UM73 1620 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 ZNF503-AS2A6NEH8 195 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 PPP2R2AP63151 447 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 ZNF227Q86WZ6 799 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 SLC52A1Q9NWF4 448 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 TRAF6Q9Y4K3 522 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 PPM1GO15355 546 aaPredicted RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 TOM1O60784 492 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 PPP1R11O60927 126 aaPredicted RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 COL9A2Q14055 689 aaPredicted RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 INF2Q27J81 1249 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 ANKLE2Q86XL3 938 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 PIWIL2Q8TC59 973 aaKnown RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 DDX17Q92841 729 aaKnown RBP4.41□□□□□ -1.7
ZNF540-207ENST00000589285 LNPKQ9C0E8 428 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 RNF32Q9H0A6 362 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 ZSWIM4Q9H7M6 989 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 SP110Q9HB58 689 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 GPR160Q9UJ42 338 aa4.41□□□□□ -1.7
ZNF540-207ENST00000589285 IQGAP3Q86VI3 1631 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 E9PCH4 1651 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 THBDP07204 575 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 NCKAP1LP55160 1127 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 TEX2Q8IWB9 1127 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 RBM12BQ8IXT5 1001 aaKnown RBP4.4□□□□□ -1.7
ZNF540-207ENST00000589285 SRPK1Q96SB4 655 aaKnown RBP4.4□□□□□ -1.7
ZNF540-207ENST00000589285 DNAJC7Q99615 494 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 IER2Q9BTL4 223 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 MKNK2Q9HBH9 465 aa4.4□□□□□ -1.7
ZNF540-207ENST00000589285 KCNA6P17658 529 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 CPSF6Q16630 551 aaKnown RBP eCLIP4.4□□□□□ -1.71
ZNF540-207ENST00000589285 SLC23A3Q6PIS1 610 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 JMJD8Q96S16 334 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 SLC12A5Q9H2X9 1139 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 SNTG2Q9NY99 539 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 IMPACTQ9P2X3 320 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 CTNND2Q9UQB3 1225 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 CLSPNQ9HAW4 1339 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 GOLGB1Q14789 3259 aaKnown RBP4.4□□□□□ -1.71
ZNF540-207ENST00000589285 PIK3C2BO00750 1634 aa4.4□□□□□ -1.71
ZNF540-207ENST00000589285 IQGAP1P46940 1657 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 ITGA4P13612 1032 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 FPR2P25090 351 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 RASA3Q14644 834 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 ZNF124Q15973 351 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 GTF2IRD2BQ6EKJ0 949 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 PRR23BQ6ZRT6 265 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 GTF2IRD2Q86UP8 949 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 ZNF655Q8N720 491 aaPredicted RBP4.39□□□□□ -1.71
ZNF540-207ENST00000589285 DAGLBQ8NCG7 672 aa4.39□□□□□ -1.71
ZNF540-207ENST00000589285 SREK1Q8WXA9 508 aaKnown RBP4.39□□□□□ -1.71
ZNF540-207ENST00000589285 SPATA32Q96LK8 384 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms