RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 KCNMB3Q9NPA1 279 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 RWDD2AQ9UIY3 292 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 PNMA2Q9UL42 364 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 ABCB11O95342 1321 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 KDM3AQ9Y4C1 1321 aa15.95■□□□□ 0.14
LIG3-205ENST00000585941 GOLGB1Q14789 3259 aaKnown RBP15.94■□□□□ 0.14
LIG3-205ENST00000585941 CYP3A4P08684 503 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 CIITAP33076 1130 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 SNAP25P60880 206 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 SV2BQ7L1I2 683 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 LRRC8AQ8IWT6 810 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 HAS1Q92839 578 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 KIFC2Q96AC6 838 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 CTAGE1Q96RT6 745 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 NT5C3AQ9H0P0 336 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 PPP2R3BQ9Y5P8 575 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 ZNF541Q9H0D2 1346 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 DOCK1Q14185 1865 aa15.94■□□□□ 0.14
LIG3-205ENST00000585941 NRDCO43847 1150 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 OFD1O75665 1012 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 CD44P16070 742 aaKnown RBP15.93■□□□□ 0.14
LIG3-205ENST00000585941 USP14P54578 494 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 PAK1Q13153 545 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 GRB10Q13322 594 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 CCDC144BQ3MJ40 725 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 SNX29Q8TEQ0 813 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 FAM20AQ96MK3 541 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 SPTLC3Q9NUV7 552 aa15.93■□□□□ 0.14
LIG3-205ENST00000585941 GCOM1H8Y6P7 765 aaPredicted RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 OPLAHO14841 1288 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 POLR2MP0CAP2 368 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 SPAG1Q07617 926 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 NOLC1Q14978 699 aaKnown RBP eCLIP15.92■□□□□ 0.14
LIG3-205ENST00000585941 ZYXQ15942 572 aaKnown RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 TPD52L1Q16890 204 aaPredicted RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 HYIQ5T013 277 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 KLHL10Q6JEL2 608 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 CNNM4Q6P4Q7 775 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 FILIP1Q7Z7B0 1213 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 TRMT44Q8IYL2 757 aaKnown RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 PRPF38AQ8NAV1 312 aaKnown RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 PLIN2Q99541 437 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 TRIM9Q9C026 710 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 GPRC5DQ9NZD1 345 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 PVALEFA0A1B0GWK0 134 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 KLRC4O43908 158 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 SBF1O95248 1867 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 FDX1P10109 184 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 KMT5BQ4FZB7 885 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 TMEM119Q4V9L6 283 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 ARHGAP27Q6ZUM4 889 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 TMC6Q7Z403 805 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 GIMAP8Q8ND71 665 aaPredicted RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 CACTINQ8WUQ7 758 aaKnown RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 LARP4BQ92615 738 aaKnown RBP15.92■□□□□ 0.14
LIG3-205ENST00000585941 MED15Q96RN5 788 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 AS3MTQ9HBK9 375 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 EXOC1Q9NV70 894 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 ZNF112Q9UJU3 913 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 RABGAP1Q9Y3P9 1069 aa15.92■□□□□ 0.14
LIG3-205ENST00000585941 POTEMA6NI47 508 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 PSMA7O14818 248 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 COBLL1Q53SF7 1204 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 CDKAL1Q5VV42 579 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 HAUS3Q68CZ6 603 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 CCDC174Q6PII3 467 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 VSTM4Q8IW00 320 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 ADSSL1Q8N142 457 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 SAMD3Q8N6K7 520 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 ANKRD20A12PQ8NF67 263 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 RAD54LQ92698 747 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 PNMA5Q96PV4 448 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 SLF1Q9BQI6 1058 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 WDR18Q9BV38 432 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 CTNND2Q9UQB3 1225 aa15.91■□□□□ 0.14
LIG3-205ENST00000585941 ICAM1P05362 532 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 ASIC1P78348 528 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 FILIP1LQ4L180 1135 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 NBPF12Q5TAG4 269 aaPredicted RBP15.9■□□□□ 0.14
LIG3-205ENST00000585941 LDHDQ86WU2 507 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 SMYD4Q8IYR2 804 aaPredicted RBP15.9■□□□□ 0.14
LIG3-205ENST00000585941 SCYL3Q8IZE3 742 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 KCTD17Q8N5Z5 321 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 ERMNQ8TAM6 284 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 ETNPPLQ8TBG4 499 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 NELFBQ8WX92 580 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 DHTKD1Q96HY7 919 aaPredicted RBP15.9■□□□□ 0.14
LIG3-205ENST00000585941 GLIS2Q9BZE0 524 aaPredicted RBP15.9■□□□□ 0.14
LIG3-205ENST00000585941 SAMSN1Q9NSI8 373 aaKnown RBP15.9■□□□□ 0.14
LIG3-205ENST00000585941 BLOC1S4Q9NUP1 217 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 PYCARDQ9ULZ3 195 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 SMCHD1A6NHR9 2005 aa15.9■□□□□ 0.14
LIG3-205ENST00000585941 ASTN2O75129 1339 aaPredicted RBP15.89■□□□□ 0.14
LIG3-205ENST00000585941 CFBP00751 764 aa15.89■□□□□ 0.13
LIG3-205ENST00000585941 SFPQP23246 707 aaKnown RBP eCLIP15.89■□□□□ 0.13
LIG3-205ENST00000585941 ZNF76P36508 570 aa15.89■□□□□ 0.13
LIG3-205ENST00000585941 PRCPP42785 496 aa15.89■□□□□ 0.13
LIG3-205ENST00000585941 PRR16Q569H4 304 aa15.89■□□□□ 0.13
LIG3-205ENST00000585941 LRRC15Q8TF66 581 aa15.89■□□□□ 0.13
LIG3-205ENST00000585941 NOC3LQ8WTT2 800 aaKnown RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 174.5 ms