RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 RAG1P15918 1043 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 PPP2CBP62714 309 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 PPP2CAP67775 309 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 SLC9A5Q14940 896 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 NRN1LQ496H8 165 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 CRTC3Q6UUV7 619 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 ARHGEF18Q6ZSZ5 1173 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 CABP7Q86V35 215 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 VPS37DQ86XT2 251 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 KYQ8NBH2 561 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 DRC1Q96MC2 740 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 ACBD3Q9H3P7 528 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 CAPN10Q9HC96 672 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 PCDH18Q9HCL0 1135 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 NUDT5Q9UKK9 219 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 FBXL21Q9UKT6 434 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 PCDHGB7Q9Y5F8 929 aa5.84□□□□□ -1.47
SMCHD1-209ENST00000583441 C9orf118A6NHY6 69 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 GBP2P32456 591 aaPredicted RBP5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 GJA8P48165 433 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 RACK1P63244 317 aaKnown RBP5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 HS1BP3Q53T59 392 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 CCDC84Q86UT8 332 aaPredicted RBP5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 KIAA0825Q8IV33 1275 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 ZNF503Q96F45 646 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 PEX11GQ96HA9 241 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 USP35Q9P2H5 1018 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 TLR6Q9Y2C9 796 aa5.83□□□□□ -1.48
SMCHD1-209ENST00000583441 GLI4P10075 376 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 IL12RB1P42701 662 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 EPHB4P54760 987 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 LMNB2Q03252 620 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 MLECQ14165 292 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 ARSHQ5FYA8 562 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 CYP2R1Q6VVX0 501 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 BNC2Q6ZN30 1099 aaPredicted RBP5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 RNF207Q6ZRF8 634 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 TTLL6Q8N841 843 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 PHC3Q8NDX5 983 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 Q8TCH9 128 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 GPRASP2Q96D09 838 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 RHOVQ96L33 236 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 SPON2Q9BUD6 331 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 COPRSQ9NQ92 184 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 KCNQ5Q9NR82 932 aa5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 SUPT16HQ9Y5B9 1047 aaKnown RBP5.82□□□□□ -1.48
SMCHD1-209ENST00000583441 KRTAP29-1A8MX34 341 aaPredicted RBP5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 NARSO43776 548 aaKnown RBP5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 GSNP06396 782 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 EIF4A3P38919 411 aaKnown RBP5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 ARID5AQ03989 594 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 PAK2Q13177 524 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 COL9A2Q14055 689 aaPredicted RBP5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 PRKD1Q15139 912 aaPredicted RBP5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 RASGRP4Q8TDF6 673 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 NEU4Q8WWR8 484 aaPredicted RBP5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 UBXN4Q92575 508 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 ARMC5Q96C12 935 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 ZNF512BQ96KM6 892 aaPredicted RBP5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 GMLQ99445 158 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 PCDHB12Q9Y5F1 795 aa5.81□□□□□ -1.48
SMCHD1-209ENST00000583441 ROBO2Q9HCK4 1378 aa5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 ZBTB7AO95365 584 aa5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 CYP1A1P04798 512 aaPredicted RBP5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 LSM12Q3MHD2 195 aaKnown RBP5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 SNAP47Q5SQN1 464 aa5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 SLFN13Q68D06 897 aa5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 NLGN2Q8NFZ4 835 aa5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 NT5C1AQ9BXI3 368 aa5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 TANGO6Q9C0B7 1094 aa5.8□□□□□ -1.48
SMCHD1-209ENST00000583441 MINDY4BA8MYZ0 360 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 IGSF3O75054 1194 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 CLEC3AO75596 197 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 C8BP07358 591 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 CAMK2GQ13555 558 aaPredicted RBP5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 CWF19L1Q69YN2 538 aaKnown RBP5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 ZNF296Q8WUU4 475 aaPredicted RBP5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 SEC16BQ96JE7 1060 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 DSCC1Q9BVC3 393 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 SLC12A9Q9BXP2 914 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 ADAMTS1Q9UHI8 967 aa5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 POLR3KQ9Y2Y1 108 aaPredicted RBP5.79□□□□□ -1.48
SMCHD1-209ENST00000583441 FAM221AA4D161 298 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 F6X3S4 739 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 PF4P02776 101 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 ATP2B1P20020 1258 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 L1CAMP32004 1257 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 PTH1RQ03431 593 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 BHLHA9Q7RTU4 235 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 GATAD2BQ8WXI9 593 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 PTPN18Q99952 460 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 SYT3Q9BQG1 590 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 LRRC3Q9BY71 257 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 MKRN2Q9H000 416 aaKnown RBP5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 STRIP2Q9ULQ0 834 aa5.78□□□□□ -1.48
SMCHD1-209ENST00000583441 GREM1O60565 184 aa5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 TBC1D8O95759 1140 aa5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 DNAJA1P31689 397 aaKnown RBP5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 USP39Q53GS9 565 aaKnown RBP5.77□□□□□ -1.49
SMCHD1-209ENST00000583441 PRAMEF18Q5VWM3 479 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms