RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.87■■□□□ 1.41
SHMT1-209ENST00000582653 HERVK_113Q902F9 699 aa23.87■■□□□ 1.41
SHMT1-209ENST00000582653 MTG1Q9BT17 334 aaPredicted RBP23.87■■□□□ 1.41
SHMT1-209ENST00000582653 ALDH8A1Q9H2A2 487 aaPredicted RBP23.87■■□□□ 1.41
SHMT1-209ENST00000582653 SENP2Q9HC62 589 aa23.87■■□□□ 1.41
SHMT1-209ENST00000582653 GPHNQ9NQX3 736 aaPredicted RBP23.87■■□□□ 1.41
SHMT1-209ENST00000582653 UNC80Q8N2C7 3258 aa23.87■■□□□ 1.41
SHMT1-209ENST00000582653 A6NJR5 290 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 E7EWF7 191 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 KPNA6O60684 536 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 SUPT20HL2P0C7V6 817 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 PPP2R5BQ15173 497 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 CHST3Q7LGC8 479 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 FBXO11Q86XK2 927 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 MCF2L2Q86YR7 1114 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 NOC4LQ9BVI4 516 aaKnown RBP23.86■■□□□ 1.41
SHMT1-209ENST00000582653 COL20A1Q9P218 1284 aa23.86■■□□□ 1.41
SHMT1-209ENST00000582653 UMODL1Q5DID0 1318 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 KLRF2D3W0D1 207 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 IFIT3O14879 490 aaKnown RBP23.85■■□□□ 1.41
SHMT1-209ENST00000582653 MYL3P08590 195 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 TXNP10599 105 aaKnown RBP23.85■■□□□ 1.41
SHMT1-209ENST00000582653 CCL23P55773 120 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 TTLL4Q14679 1199 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 GRIN2CQ14957 1233 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 STOX1Q6ZVD7 989 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 RPUSD2Q8IZ73 545 aaKnown RBP23.85■■□□□ 1.41
SHMT1-209ENST00000582653 MAFAQ8NHW3 353 aaPredicted RBP23.85■■□□□ 1.41
SHMT1-209ENST00000582653 SYTL5Q8TDW5 730 aaPredicted RBP23.85■■□□□ 1.41
SHMT1-209ENST00000582653 MAP4K1Q92918 833 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 TIFAQ96CG3 184 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 TAAR1Q96RJ0 339 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 ZNF576Q9H609 170 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 MAD2L2Q9UI95 211 aa23.85■■□□□ 1.41
SHMT1-209ENST00000582653 MRPL11Q9Y3B7 192 aaKnown RBP23.85■■□□□ 1.41
SHMT1-209ENST00000582653 NSUN6Q8TEA1 469 aaKnown RBP23.84■■□□□ 1.41
SHMT1-209ENST00000582653 COPS5Q92905 334 aa23.84■■□□□ 1.41
SHMT1-209ENST00000582653 IWS1Q96ST2 819 aa23.84■■□□□ 1.41
SHMT1-209ENST00000582653 GRXCR1A8MXD5 290 aa23.83■■□□□ 1.41
SHMT1-209ENST00000582653 FOSL2P15408 326 aa23.83■■□□□ 1.41
SHMT1-209ENST00000582653 CCDC62Q6P9F0 684 aa23.83■■□□□ 1.41
SHMT1-209ENST00000582653 RALYLQ86SE5 291 aaKnown RBP23.83■■□□□ 1.41
SHMT1-209ENST00000582653 SKAP1Q86WV1 359 aa23.83■■□□□ 1.41
SHMT1-209ENST00000582653 NCOA7Q8NI08 942 aa23.83■■□□□ 1.41
SHMT1-209ENST00000582653 PBX4Q9BYU1 374 aa23.83■■□□□ 1.41
SHMT1-209ENST00000582653 WNT8AQ9H1J5 351 aa23.83■■□□□ 1.41
SHMT1-209ENST00000582653 MTIF3Q9H2K0 278 aaKnown RBP23.83■■□□□ 1.41
SHMT1-209ENST00000582653 EYSQ5T1H1 3165 aa23.83■■□□□ 1.4
SHMT1-209ENST00000582653 PALM3A6NDB9 673 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-209ENST00000582653 PPP1R11O60927 126 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-209ENST00000582653 STXBP2Q15833 593 aa23.82■■□□□ 1.4
SHMT1-209ENST00000582653 SLC35G1Q2M3R5 365 aa23.82■■□□□ 1.4
SHMT1-209ENST00000582653 NBPF20Q3BBV1 942 aa23.82■■□□□ 1.4
SHMT1-209ENST00000582653 TRMT13Q9NUP7 481 aaKnown RBP23.82■■□□□ 1.4
SHMT1-209ENST00000582653 CXXC1Q9P0U4 656 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-209ENST00000582653 RBM8AQ9Y5S9 174 aaKnown RBP23.82■■□□□ 1.4
SHMT1-209ENST00000582653 ERICH2A1L162 156 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 ARIH2O95376 493 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 PBX2P40425 430 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 PTPN11Q06124 597 aaPredicted RBP23.81■■□□□ 1.4
SHMT1-209ENST00000582653 NFRKBQ6P4R8 1299 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 OTOP2Q7RTS6 562 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 MTMR8Q96EF0 704 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 RMDN3Q96TC7 470 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 AMNQ9BXJ7 453 aa23.81■■□□□ 1.4
SHMT1-209ENST00000582653 OPLAHO14841 1288 aa23.8■■□□□ 1.4
SHMT1-209ENST00000582653 CFBP00751 764 aa23.8■■□□□ 1.4
SHMT1-209ENST00000582653 CYP2C9P11712 490 aa23.8■■□□□ 1.4
SHMT1-209ENST00000582653 ANTXR2P58335 489 aa23.8■■□□□ 1.4
SHMT1-209ENST00000582653 GRM4Q14833 912 aa23.8■■□□□ 1.4
SHMT1-209ENST00000582653 WTAPQ15007 396 aa23.8■■□□□ 1.4
SHMT1-209ENST00000582653 VWCEQ96DN2 955 aa23.8■■□□□ 1.4
SHMT1-209ENST00000582653 MAP3K20Q9NYL2 800 aaKnown RBP23.8■■□□□ 1.4
SHMT1-209ENST00000582653 ZBTB5O15062 677 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 TMEM67Q5HYA8 995 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 SEPT14Q6ZU15 432 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 HOMER1Q86YM7 354 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 IGDCC4Q8TDY8 1250 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 PPP1R13LQ8WUF5 828 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 SCLYQ96I15 445 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 COL25A1Q9BXS0 654 aaPredicted RBP23.79■■□□□ 1.4
SHMT1-209ENST00000582653 MSRAQ9UJ68 235 aa23.79■■□□□ 1.4
SHMT1-209ENST00000582653 EIF3JO75822 258 aaKnown RBP23.78■■□□□ 1.4
SHMT1-209ENST00000582653 GHRHRQ02643 423 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 TROAPQ12815 778 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 RAB30Q15771 203 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 LY6KQ17RY6 165 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 FAM47CQ5HY64 1035 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 ARHGEF16Q5VV41 709 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 MB21D2Q8IYB1 491 aaPredicted RBP23.78■■□□□ 1.4
SHMT1-209ENST00000582653 PIGSQ96S52 555 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 PCDHA1Q9Y5I3 950 aa23.78■■□□□ 1.4
SHMT1-209ENST00000582653 CYTH3O43739 400 aa23.77■■□□□ 1.4
SHMT1-209ENST00000582653 GH1P01241 217 aa23.77■■□□□ 1.4
SHMT1-209ENST00000582653 PFKMP08237 780 aa23.77■■□□□ 1.4
SHMT1-209ENST00000582653 EIF2AK2P19525 551 aaKnown RBP23.77■■□□□ 1.4
SHMT1-209ENST00000582653 SART3Q15020 963 aaKnown RBP23.77■■□□□ 1.4
SHMT1-209ENST00000582653 SAMD3Q8N6K7 520 aa23.77■■□□□ 1.4
SHMT1-209ENST00000582653 AFG1LQ8WV93 481 aa23.77■■□□□ 1.4
SHMT1-209ENST00000582653 LSG1Q9H089 658 aaKnown RBP23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms