RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 NAP1L4Q99733 375 aaKnown RBP11.91□□□□□ -0.5
SS18-217ENST00000580958 DNAJC25Q9H1X3 360 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 ELP3Q9H9T3 547 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 SLC38A10Q9HBR0 1119 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 TMOD4Q9NZQ9 345 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 CTDP1Q9Y5B0 961 aaPredicted RBP11.91□□□□□ -0.5
SS18-217ENST00000580958 CSADQ9Y600 493 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 A0A0G2JMZ2 1700 aa11.91□□□□□ -0.5
SS18-217ENST00000580958 PP2D1A8MPX8 630 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 GCOM1H8Y6P7 765 aaPredicted RBP11.9□□□□□ -0.5
SS18-217ENST00000580958 PIK3CDO00329 1044 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 ZBED4O75132 1171 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 CFBP00751 764 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 POLR2MP0CAP2 368 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 GCFC2P16383 781 aaKnown RBP11.9□□□□□ -0.5
SS18-217ENST00000580958 TXLNAP40222 546 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 UVSSAQ2YD98 709 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 PPP4R3AQ6IN85 833 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 MOB2Q70IA6 237 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 FCHSD1Q86WN1 690 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 ELOA2Q8IYF1 753 aaPredicted RBP11.9□□□□□ -0.5
SS18-217ENST00000580958 GRAMD1CQ8IYS0 662 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 CPXCR1Q8N123 301 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 ATG4CQ96DT6 458 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 MTMR9Q96QG7 549 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 RAVER2Q9HCJ3 691 aaKnown RBP11.9□□□□□ -0.5
SS18-217ENST00000580958 ANO10Q9NW15 660 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 DDX25Q9UHL0 483 aaKnown RBP11.9□□□□□ -0.5
SS18-217ENST00000580958 USP25Q9UHP3 1055 aa11.9□□□□□ -0.5
SS18-217ENST00000580958 LCTP09848 1927 aa11.9□□□□□ -0.51
SS18-217ENST00000580958 KIAA1217Q5T5P2 1943 aa11.9□□□□□ -0.51
SS18-217ENST00000580958 CYP3A7-CYP3A51PA0A087WV96 503 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 BIN1O00499 593 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 ALAS1P13196 640 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 CYP3A7P24462 503 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 CDC25AP30304 524 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 SREBF1P36956 1147 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 TXKP42681 527 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 USP11P51784 963 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 NLRP12P59046 1061 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 ARHGAP4P98171 946 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 MDM2Q00987 491 aaPredicted RBP11.89□□□□□ -0.51
SS18-217ENST00000580958 KARSQ15046 597 aaKnown RBP11.89□□□□□ -0.51
SS18-217ENST00000580958 POSTNQ15063 836 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 ZRSR1Q15695 479 aaKnown RBP11.89□□□□□ -0.51
SS18-217ENST00000580958 E2F4Q16254 413 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 SH3D19Q5HYK7 790 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 KANK3Q6NY19 840 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 C11orf57Q6ZUT1 292 aaPredicted RBP11.89□□□□□ -0.51
SS18-217ENST00000580958 ZNF467Q7Z7K2 595 aaPredicted RBP11.89□□□□□ -0.51
SS18-217ENST00000580958 PNMA8AQ86V59 439 aaPredicted RBP11.89□□□□□ -0.51
SS18-217ENST00000580958 TEX2Q8IWB9 1127 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 CEP57L1Q8IYX8 460 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 FAM200AQ8TCP9 573 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 CRYGNQ8WXF5 182 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 WNK4Q96J92 1243 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 CLMNQ96JQ2 1002 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 AK8Q96MA6 479 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 MBOAT7Q96N66 472 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 CBX8Q9HC52 389 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 HOOK1Q9UJC3 728 aaKnown RBP11.89□□□□□ -0.51
SS18-217ENST00000580958 TUBE1Q9UJT0 475 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 TRPM7Q96QT4 1865 aa11.89□□□□□ -0.51
SS18-217ENST00000580958 MARCH6O60337 910 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 SLFN14P0C7P3 912 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 FDX1P10109 184 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 UBA7P41226 1012 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 TECP42680 631 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 TMEM266Q2M3C6 531 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 PDXDC2PQ6P474 469 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 MOXD1Q6UVY6 613 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 CATSPERGQ6ZRH7 1159 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 SH3RF1Q7Z6J0 888 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 CABP7Q86V35 215 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 ANKRD13AQ8IZ07 590 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 IQUBQ8NA54 791 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 CLEC4DQ8WXI8 215 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 HAS1Q92839 578 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 PAGE5Q96GU1 130 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 PYM1Q9BRP8 204 aaKnown RBP11.88□□□□□ -0.51
SS18-217ENST00000580958 CCSER1Q9C0I3 900 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 WDR81Q562E7 1941 aa11.88□□□□□ -0.51
SS18-217ENST00000580958 VWA5AO00534 786 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 NFIBO00712 420 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 CYP3A4P08684 503 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 STAT6P42226 847 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 AFMP43652 599 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 ZNF165P49910 485 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 COG2Q14746 738 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 MUM1L1Q5H9M0 696 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 ISM2Q6H9L7 571 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 POTEGQ6S5H5 508 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 ARMC9Q7Z3E5 817 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 IGSF22Q8N9C0 903 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 REPS2Q8NFH8 660 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 RASSF8Q8NHQ8 419 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 RBM46Q8TBY0 533 aaKnown RBP11.87□□□□□ -0.51
SS18-217ENST00000580958 SPOCK2Q92563 424 aa11.87□□□□□ -0.51
SS18-217ENST00000580958 ANP32BQ92688 251 aaKnown RBP11.87□□□□□ -0.51
SS18-217ENST00000580958 GJA10Q969M2 543 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms