RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 UNC79Q9P2D8 2635 aa7.23□□□□□ -1.25
VPS53-219ENST00000576019 CPDO75976 1380 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 A0A0G2JLW4 131 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 TTLL8A6PVC2 850 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 NEMP1O14524 444 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 RFPL1O75677 317 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 TP53P04637 393 aaPredicted RBP7.22□□□□□ -1.25
VPS53-219ENST00000576019 ITGAVP06756 1048 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 THBS1P07996 1170 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 CT47B1P0C2W7 299 aaPredicted RBP7.22□□□□□ -1.25
VPS53-219ENST00000576019 NBPF7P0C2Y1 421 aaPredicted RBP7.22□□□□□ -1.25
VPS53-219ENST00000576019 ESRRAP11474 423 aaPredicted RBP7.22□□□□□ -1.25
VPS53-219ENST00000576019 PABPC1P11940 636 aaKnown RBP7.22□□□□□ -1.25
VPS53-219ENST00000576019 TNP2Q05952 138 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 TBC1D8BQ0IIM8 1120 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 CDCP2Q5VXM1 449 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 SCARA3Q6AZY7 606 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 PPFIBP1Q86W92 1011 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 ZNF227Q86WZ6 799 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 TPH2Q8IWU9 490 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 MARK1Q9P0L2 795 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 SUCOQ9UBS9 1254 aaKnown RBP7.22□□□□□ -1.25
VPS53-219ENST00000576019 APEX2Q9UBZ4 518 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 SUSD2Q9UGT4 822 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 STXBP5LQ9Y2K9 1186 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 PCDHGC4Q9Y5F7 938 aa7.22□□□□□ -1.25
VPS53-219ENST00000576019 NPHP1O15259 732 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 CAPN5O15484 640 aaPredicted RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 AVPP01185 164 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 EPHX1P07099 455 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 C6orf222P0C671 652 aaPredicted RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 JMJD7P0C870 316 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 NAT2P11245 290 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 RAG1P15918 1043 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 CD33P20138 364 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 POU3F2P20265 443 aaPredicted RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 PURAQ00577 322 aaKnown RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 RAPGEF1Q13905 1077 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 PTPN21Q16825 1174 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 SKOR2Q2VWA4 1001 aaPredicted RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 INO80DQ53TQ3 878 aaPredicted RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 TRIM61Q5EBN2 209 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 CYP4F22Q6NT55 531 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 NSMFQ6X4W1 530 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 LDHDQ86WU2 507 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 IFNL3Q8IZI9 196 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 LRRN4CLQ8ND94 238 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 PI4K2BQ8TCG2 481 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 OSBP2Q969R2 916 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 LACRTQ9GZZ8 138 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 USP25Q9UHP3 1055 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 ABT1Q9ULW3 272 aaKnown RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 LUC7L2Q9Y383 392 aaKnown RBP7.21□□□□□ -1.26
VPS53-219ENST00000576019 CACNA1GO43497 2377 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 SLIT3O75094 1523 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 ITSN1Q15811 1721 aa7.21□□□□□ -1.26
VPS53-219ENST00000576019 CENPFP49454 3210 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 EEA1Q15075 1411 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 ANKRD34BA5PLL1 514 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 CHURC1-FNTBB4DL54 471 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 TBX1O43435 398 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 AOC2O75106 756 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 FBXO21O94952 628 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 NPTXRO95502 500 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 FGFR1P11362 822 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 TRIM27P14373 513 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 PTPRAP18433 802 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 CD53P19397 219 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 POU5F1BQ06416 359 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 AP3B2Q13367 1082 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 PICALMQ13492 652 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 WDR78Q5VTH9 848 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 FLAD1Q8NFF5 587 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 ELMO3Q96BJ8 720 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.2□□□□□ -1.26
VPS53-219ENST00000576019 IFT22Q9H7X7 185 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 EFCC1Q9HA90 598 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 CRTAC1Q9NQ79 661 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 ABCC6O95255 1503 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 GPRASP1Q5JY77 1395 aa7.2□□□□□ -1.26
VPS53-219ENST00000576019 E9PCH4 1651 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 PRAMEF27A3QJZ7 478 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 BLACEA4D250 179 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 MAFGO15525 162 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 ASLP04424 464 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 PYGMP11217 842 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 DGKGP49619 791 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 ZNF143P52747 638 aaPredicted RBP7.19□□□□□ -1.26
VPS53-219ENST00000576019 PDE4BQ07343 736 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 LAMC2Q13753 1193 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 MORC3Q14149 939 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 IKBKEQ14164 716 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 ACBD5Q5T8D3 534 aaPredicted RBP7.19□□□□□ -1.26
VPS53-219ENST00000576019 CXorf57Q6NSI4 855 aaKnown RBP7.19□□□□□ -1.26
VPS53-219ENST00000576019 HDXQ7Z353 690 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 WAPLQ7Z5K2 1190 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 CRIPAKQ8N1N5 446 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 PAF1Q8N7H5 531 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 USP33Q8TEY7 942 aa7.19□□□□□ -1.26
VPS53-219ENST00000576019 FGD4Q96M96 766 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms