RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ASTLQ6HA08 431 aaPredicted RBP19.62■□□□□ 0.73
VPS53-218ENST00000575207 EEPD1Q7L9B9 569 aa19.62■□□□□ 0.73
VPS53-218ENST00000575207 MYOCDQ8IZQ8 938 aa19.62■□□□□ 0.73
VPS53-218ENST00000575207 DHX38Q92620 1227 aaKnown RBP19.62■□□□□ 0.73
VPS53-218ENST00000575207 CCDC17Q96LX7 622 aa19.62■□□□□ 0.73
VPS53-218ENST00000575207 SLC38A10Q9HBR0 1119 aa19.62■□□□□ 0.73
VPS53-218ENST00000575207 INCENPQ9NQS7 918 aa19.62■□□□□ 0.73
VPS53-218ENST00000575207 USP15Q9Y4E8 981 aaPredicted RBP19.62■□□□□ 0.73
VPS53-218ENST00000575207 KPNA6O60684 536 aa19.61■□□□□ 0.73
VPS53-218ENST00000575207 RB1P06400 928 aa19.61■□□□□ 0.73
VPS53-218ENST00000575207 CKBP12277 381 aa19.61■□□□□ 0.73
VPS53-218ENST00000575207 OAZ1P54368 228 aa19.61■□□□□ 0.73
VPS53-218ENST00000575207 RIOK1Q9BRS2 568 aaKnown RBP19.61■□□□□ 0.73
VPS53-218ENST00000575207 KANSL2Q9H9L4 492 aa19.61■□□□□ 0.73
VPS53-218ENST00000575207 A1CFQ9NQ94 594 aaKnown RBP19.61■□□□□ 0.73
VPS53-218ENST00000575207 MCM9Q9NXL9 1143 aa19.61■□□□□ 0.73
VPS53-218ENST00000575207 DDX49Q9Y6V7 483 aaKnown RBP19.61■□□□□ 0.73
VPS53-218ENST00000575207 NLRC5Q86WI3 1866 aa19.6■□□□□ 0.73
VPS53-218ENST00000575207 GRM6O15303 877 aa19.6■□□□□ 0.73
VPS53-218ENST00000575207 ATF7P17544 494 aaPredicted RBP19.6■□□□□ 0.73
VPS53-218ENST00000575207 ZAP70P43403 619 aa19.6■□□□□ 0.73
VPS53-218ENST00000575207 TMED8Q6PL24 325 aaPredicted RBP19.6■□□□□ 0.73
VPS53-218ENST00000575207 ZNF512BQ96KM6 892 aaPredicted RBP19.6■□□□□ 0.73
VPS53-218ENST00000575207 YME1L1Q96TA2 773 aa19.6■□□□□ 0.73
VPS53-218ENST00000575207 HDAC5Q9UQL6 1122 aa19.6■□□□□ 0.73
VPS53-218ENST00000575207 NAV1Q8NEY1 1877 aa19.6■□□□□ 0.73
VPS53-218ENST00000575207 RALGAPA2Q2PPJ7 1873 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 CLCN5P51795 746 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 BRDTQ58F21 947 aaPredicted RBP19.59■□□□□ 0.73
VPS53-218ENST00000575207 TTC39AQ5SRH9 613 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 TRAF7Q6Q0C0 670 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 SESTD1Q86VW0 696 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 KCNG4Q8TDN1 519 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 MORC4Q8TE76 937 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 TOP1MTQ969P6 601 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 NUP88Q99567 741 aaPredicted RBP19.59■□□□□ 0.73
VPS53-218ENST00000575207 C11orf84Q9BUA3 381 aaPredicted RBP19.59■□□□□ 0.73
VPS53-218ENST00000575207 ACAD9Q9H845 621 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 COG6Q9Y2V7 657 aa19.59■□□□□ 0.73
VPS53-218ENST00000575207 ASPMQ8IZT6 3477 aa19.58■□□□□ 0.73
VPS53-218ENST00000575207 LGR5O75473 907 aa19.58■□□□□ 0.72
VPS53-218ENST00000575207 CCDC158Q5M9N0 1113 aa19.58■□□□□ 0.72
VPS53-218ENST00000575207 CTDP1Q9Y5B0 961 aaPredicted RBP19.58■□□□□ 0.72
VPS53-218ENST00000575207 A6NJR5 290 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 RAD21O60216 631 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 IDH1O75874 414 aaKnown RBP19.57■□□□□ 0.72
VPS53-218ENST00000575207 MBTPS1Q14703 1052 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 RSPO4Q2I0M5 234 aaPredicted RBP19.57■□□□□ 0.72
VPS53-218ENST00000575207 GDF6Q6KF10 455 aaPredicted RBP19.57■□□□□ 0.72
VPS53-218ENST00000575207 UBALD2Q8IYN6 164 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 EFHBQ8N7U6 833 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 SUSD6Q92537 303 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 DYNLL2Q96FJ2 89 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 WDR11Q9BZH6 1224 aa19.57■□□□□ 0.72
VPS53-218ENST00000575207 RBM47A0AV96 593 aaKnown RBP19.56■□□□□ 0.72
VPS53-218ENST00000575207 LINC00271P0C7V0 271 aa19.56■□□□□ 0.72
VPS53-218ENST00000575207 CTNNB1P35222 781 aa19.56■□□□□ 0.72
VPS53-218ENST00000575207 BMPR1AP36894 532 aa19.56■□□□□ 0.72
VPS53-218ENST00000575207 ZBTB33Q86T24 672 aa19.56■□□□□ 0.72
VPS53-218ENST00000575207 OR6J1Q8NGC5 347 aa19.56■□□□□ 0.72
VPS53-218ENST00000575207 HOMER2Q9NSB8 354 aa19.56■□□□□ 0.72
VPS53-218ENST00000575207 SRGAP3O43295 1099 aa19.55■□□□□ 0.72
VPS53-218ENST00000575207 CYP2D6P10635 497 aa19.55■□□□□ 0.72
VPS53-218ENST00000575207 CAMK1Q14012 370 aa19.55■□□□□ 0.72
VPS53-218ENST00000575207 DBF4BQ8NFT6 615 aa19.55■□□□□ 0.72
VPS53-218ENST00000575207 PPP2R3CQ969Q6 453 aa19.55■□□□□ 0.72
VPS53-218ENST00000575207 RAD50Q92878 1312 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 RBAK-RBAKDNI3L0D1 243 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 MMP1P03956 469 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 HOXB3P14651 431 aaPredicted RBP19.54■□□□□ 0.72
VPS53-218ENST00000575207 MTX1Q13505 466 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 ANGPT1Q15389 498 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 KIAA0319Q5VV43 1072 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 KREMEN2Q8NCW0 462 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 KIFC2Q96AC6 838 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 HAUS7Q99871 368 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 DCP1AQ9NPI6 582 aaPredicted RBP19.54■□□□□ 0.72
VPS53-218ENST00000575207 RWDD3Q9Y3V2 267 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 MYH8P13535 1937 aa19.54■□□□□ 0.72
VPS53-218ENST00000575207 ZFYVE26Q68DK2 2539 aa19.53■□□□□ 0.72
VPS53-218ENST00000575207 F5H6K3 240 aa19.53■□□□□ 0.72
VPS53-218ENST00000575207 KLRC3Q07444 240 aa19.53■□□□□ 0.72
VPS53-218ENST00000575207 DBNDD2Q9BQY9 259 aa19.53■□□□□ 0.72
VPS53-218ENST00000575207 CRNKL1Q9BZJ0 848 aaKnown RBP19.53■□□□□ 0.72
VPS53-218ENST00000575207 EMSYQ7Z589 1322 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 BRD1O95696 1058 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 GLP2RO95838 553 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 CDK8P49336 464 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 MTMR3Q13615 1198 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 TRIM71Q2Q1W2 868 aaKnown RBP19.52■□□□□ 0.72
VPS53-218ENST00000575207 ZNF618Q5T7W0 954 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 FIBCD1Q8N539 461 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 RUBCNQ92622 972 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 PRKRIP1Q9H875 184 aaPredicted RBP19.52■□□□□ 0.72
VPS53-218ENST00000575207 RNF146Q9NTX7 359 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 BARX2Q9UMQ3 279 aaPredicted RBP19.52■□□□□ 0.72
VPS53-218ENST00000575207 SORCS3Q9UPU3 1222 aa19.52■□□□□ 0.72
VPS53-218ENST00000575207 NKRFO15226 690 aaKnown RBP eCLIP19.51■□□□□ 0.71
VPS53-218ENST00000575207 NDUFB10O96000 172 aa19.51■□□□□ 0.71
VPS53-218ENST00000575207 SDHBP21912 280 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms