RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	CTAGE1	Q96RT6	745 aa		11.27	□□□□□ -0.61
SMG6-213	ENST00000573166	MAP7D2	Q96T17	732 aa		11.27	□□□□□ -0.61
SMG6-213	ENST00000573166	RIC8A	Q9NPQ8	531 aa		11.27	□□□□□ -0.61
SMG6-213	ENST00000573166	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.27	□□□□□ -0.61
SMG6-213	ENST00000573166	HPS5	Q9UPZ3	1129 aa		11.27	□□□□□ -0.61
SMG6-213	ENST00000573166	C4B	P0C0L5	1744 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166		A0A1W2PQ27	194 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166		A0A1W2PQ64	194 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166		A0A1W2PQD8	194 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	VCAM1	P19320	739 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	YY1	P25490	414 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	SREBF2	Q12772	1141 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	PDXDC2P	Q6P474	469 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	VPS36	Q86VN1	386 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	DEPTOR	Q8TB45	409 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	IMPG2	Q9BZV3	1241 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	IL17RB	Q9NRM6	502 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	MAD2L2	Q9UI95	211 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	FRMD4B	Q9Y2L6	1034 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	MEIS1	O00470	390 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	RRP9	O43818	475 aa	Known RBP	11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	USO1	O60763	962 aa	Known RBP	11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	ADCY5	O95622	1261 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	MYL5	Q02045	173 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	MIS18BP1	Q6P0N0	1132 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	KRBA2	Q6ZNG9	492 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	GPRC5A	Q8NFJ5	357 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	TRIM6	Q9C030	488 aa	Predicted RBP	11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	EXOC7	Q9UPT5	735 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	CTNND2	Q9UQB3	1225 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	CNTNAP5	Q8WYK1	1306 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	PALM3	A6NDB9	673 aa	Predicted RBP	11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	TMOD1	P28289	359 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	MLKL	Q8NB16	471 aa		11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	TAF1D	Q9H5J8	278 aa	Predicted RBP	11.26	□□□□□ -0.61
SMG6-213	ENST00000573166	CETN3	O15182	167 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	SET	Q01105	290 aa	Predicted RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	ARL6IP4	Q66PJ3	421 aa	Known RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	FAM177A1	Q8N128	213 aa	Predicted RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	SLC7A3	Q8WY07	619 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	PUF60	Q9UHX1	559 aa	Known RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	KCNG1	Q9UIX4	513 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	SRPRB	Q9Y5M8	271 aa	Known RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	SMARCA1	P28370	1054 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	DCAF17	Q5H9S7	520 aa	Predicted RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	LUZP1	Q86V48	1076 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	CSGALNACT2	Q8N6G5	542 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	ANKRD13C	Q8N6S4	541 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	LARP4B	Q92615	738 aa	Known RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	CEP170P1	Q96L14	293 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	FNBP1	Q96RU3	617 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	BTAF1	O14981	1849 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	TDP2	O95551	362 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	UVSSA	Q2YD98	709 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	FAM178B	Q8IXR5	827 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	C17orf53	Q8N3J3	647 aa	Predicted RBP	11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	GMCL1	Q96IK5	515 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	NACC1	Q96RE7	527 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	KIAA1683	Q9H0B3	1180 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	KIAA1468	Q9P260	1216 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	USP54	Q70EL1	1684 aa		11.25	□□□□□ -0.61
SMG6-213	ENST00000573166	CXCL11	O14625	94 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	CCP110	O43303	1012 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	VGLL4	Q14135	290 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	CHADL	Q6NUI6	762 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	MOB2	Q70IA6	237 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	CDAN1	Q8IWY9	1227 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	TXLNB	Q8N3L3	684 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	TSC1	Q92574	1164 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	EPSTI1	Q96J88	318 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	TMEM63C	Q9P1W3	806 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	COL4A3BP	Q9Y5P4	624 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	LRRIQ4	A6NIV6	560 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	SLC25A27	O95847	323 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	PSAP	P07602	524 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	PAK1	Q13153	545 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	KIAA1328	Q86T90	577 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	GTF3C2	Q8WUA4	911 aa	Predicted RBP	11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	NPM3	O75607	178 aa	Known RBP	11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	ERCC3	P19447	782 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	EVX2	Q03828	476 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	SPA17	Q15506	151 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	TKFC	Q3LXA3	575 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	CEP55	Q53EZ4	464 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	FAM20A	Q96MK3	541 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	POTEM	A6NI47	508 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	ASB14	A6NK59	587 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	FZD9	O00144	591 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	STXBP3	O00186	592 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	IPO5	O00410	1097 aa	Known RBP	11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	GTPBP6	O43824	516 aa	Predicted RBP	11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	CTDNEP1	O95476	244 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	EPB41	P11171	864 aa	Known RBP	11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	FDPS	P14324	419 aa	Known RBP	11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	PTPRA	P18433	802 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	MARK3	P27448	753 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	BIRC3	Q13489	604 aa		11.24	□□□□□ -0.61
SMG6-213	ENST00000573166	CCDC70	Q6NSX1	233 aa		11.24	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms