RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 IGSF1Q8N6C5 1336 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 PLIN1O60240 522 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 NEFMP07197 916 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 MAP4P27816 1152 aaKnown RBP7.61□□□□□ -1.19
VPS53-212ENST00000572259 OS9Q13438 667 aaPredicted RBP7.61□□□□□ -1.19
VPS53-212ENST00000572259 MAP7Q14244 749 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 NFKBIBQ15653 356 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 C1orf141Q5JVX7 400 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 SULT6B1Q6IMI4 303 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 KRBA2Q6ZNG9 492 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 FAM20CQ8IXL6 584 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 ARMC10Q8N2F6 343 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 FAM13CQ8NE31 585 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 TP53INP1Q96A56 240 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 ACSS3Q9H6R3 686 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 LGR6Q9HBX8 967 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 KLHL3Q9UH77 587 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 ZNRF3Q9ULT6 936 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 MRVI1Q9Y6F6 885 aa7.61□□□□□ -1.19
VPS53-212ENST00000572259 KRTAP9-6A0A140TA67 174 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 FAM95CA0A1B0GW59 222 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 KCNQ2O43526 872 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 NFICP08651 508 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 IL13P35225 146 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 YARSP54577 528 aaKnown RBP7.6□□□□□ -1.19
VPS53-212ENST00000572259 DDX10Q13206 875 aaKnown RBP7.6□□□□□ -1.19
VPS53-212ENST00000572259 TMEM201Q5SNT2 666 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 SLC6A19Q695T7 634 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 PAOXQ6QHF9 649 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 OR6P1Q8NGX9 317 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 NAP1L5Q96NT1 182 aaPredicted RBP7.6□□□□□ -1.19
VPS53-212ENST00000572259 IER2Q9BTL4 223 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 GMIPQ9P107 970 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 TJP2Q9UDY2 1190 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 MEGF6O75095 1541 aa7.6□□□□□ -1.19
VPS53-212ENST00000572259 TXNRD1Q16881 649 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 BEND4Q6ZU67 534 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 LRP10Q7Z4F1 713 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 MCATQ8IVS2 390 aaKnown RBP7.59□□□□□ -1.19
VPS53-212ENST00000572259 APPBP2Q92624 585 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 SMARCC1Q92922 1105 aaPredicted RBP7.59□□□□□ -1.19
VPS53-212ENST00000572259 ACSF2Q96CM8 615 aaPredicted RBP7.59□□□□□ -1.19
VPS53-212ENST00000572259 TMEM87BQ96K49 555 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 SEMA6CQ9H3T2 930 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 FBRSQ9HAH7 460 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 STK32BQ9NY57 414 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 R3HCC1Q9Y3T6 440 aaKnown RBP7.59□□□□□ -1.19
VPS53-212ENST00000572259 NCAPD2Q15021 1401 aa7.59□□□□□ -1.19
VPS53-212ENST00000572259 RGPD3A6NKT7 1758 aaPredicted RBP7.59□□□□□ -1.2
VPS53-212ENST00000572259 RGPD4Q7Z3J3 1758 aa7.59□□□□□ -1.2
VPS53-212ENST00000572259 NHSQ6T4R5 1651 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 BTAF1O14981 1849 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 ERVV-2B6SEH9 535 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 CYP27B1O15528 508 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 PPP2R1AP30153 589 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 NTF4P34130 210 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 HDAC1Q13547 482 aaPredicted RBP7.58□□□□□ -1.2
VPS53-212ENST00000572259 PLA2G4EQ3MJ16 856 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 ZNF530Q6P9A1 599 aaPredicted RBP7.58□□□□□ -1.2
VPS53-212ENST00000572259 CLEC10AQ8IUN9 316 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 EZH1Q92800 747 aaPredicted RBP7.58□□□□□ -1.2
VPS53-212ENST00000572259 SHDQ96IW2 340 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 MTA3Q9BTC8 594 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 PNNQ9H307 717 aaKnown RBP7.58□□□□□ -1.2
VPS53-212ENST00000572259 HOMER2Q9NSB8 354 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 FANCLQ9NW38 375 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 SNTG2Q9NY99 539 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 TMOD3Q9NYL9 352 aa7.58□□□□□ -1.2
VPS53-212ENST00000572259 CCDC189A1A4V9 331 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 SLC22A31A6NKX4 558 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 UPK3BL1B0FP48 263 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 CHURC1-FNTBB4DL54 471 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 UPK3BL2E5RIL1 263 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 HMOX1P09601 288 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 PHKG2P15735 406 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 RAG1P15918 1043 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 GIPRP48546 466 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 GSK3AP49840 483 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 CHMP4BP1P59074 171 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 SLBPQ14493 270 aaKnown RBP eCLIP7.57□□□□□ -1.2
VPS53-212ENST00000572259 R3HDM1Q15032 1099 aaKnown RBP7.57□□□□□ -1.2
VPS53-212ENST00000572259 MAP9Q49MG5 647 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 XP32Q5T750 250 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 WDR78Q5VTH9 848 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 KIAA0907Q7Z7F0 614 aaPredicted RBP7.57□□□□□ -1.2
VPS53-212ENST00000572259 MRPL41Q8IXM3 137 aaKnown RBP7.57□□□□□ -1.2
VPS53-212ENST00000572259 PHACTR4Q8IZ21 702 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 RBBP8NLQ8NC74 664 aaPredicted RBP7.57□□□□□ -1.2
VPS53-212ENST00000572259 GIMAP7Q8NHV1 300 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 TMEM40Q8WWA1 233 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 DEPDC7Q96QD5 511 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 SSBP4Q9BWG4 385 aaPredicted RBP7.57□□□□□ -1.2
VPS53-212ENST00000572259 TRIM55Q9BYV6 548 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 FOXQ1Q9C009 403 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 ANTXR1Q9H6X2 564 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 JADE2Q9NQC1 790 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 STOML1Q9UBI4 398 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 RPS6KL1Q9Y6S9 549 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 PKD1L3Q7Z443 1732 aa7.57□□□□□ -1.2
VPS53-212ENST00000572259 SHANK3Q9BYB0 1731 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms