RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SH3RF1Q7Z6J0 888 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 TDHQ8IZJ6 230 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 SCFD2Q8WU76 684 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 VTI1AQ96AJ9 217 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 TRIM43Q96BQ3 446 aaPredicted RBP23.54■■□□□ 1.36
CLK3-225ENST00000569063 NEK1Q96PY6 1258 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 RMDN3Q96TC7 470 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 SPZ1Q9BXG8 430 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 MROH7Q68CQ1 1323 aa23.54■■□□□ 1.36
CLK3-225ENST00000569063 A0A0U1RQG5 324 aaPredicted RBP23.53■■□□□ 1.36
CLK3-225ENST00000569063 NKRFO15226 690 aaKnown RBP eCLIP23.53■■□□□ 1.36
CLK3-225ENST00000569063 FAAP100Q0VG06 881 aa23.53■■□□□ 1.36
CLK3-225ENST00000569063 LZTS2Q9BRK4 669 aa23.53■■□□□ 1.36
CLK3-225ENST00000569063 LTBP2Q14767 1821 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 DCDC2CA8MYV0 355 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 ARVCFO00192 962 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 KIAA0355O15063 1070 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 GNAQP50148 359 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 PPP2R5BQ15173 497 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 STXBP2Q15833 593 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 CXCL17Q6UXB2 119 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 SGMS1Q86VZ5 419 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 RASEFQ8IZ41 740 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 PXMP2Q9NR77 195 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 TRIOBPQ9H2D6 2365 aa23.52■■□□□ 1.36
CLK3-225ENST00000569063 EXOSC10Q01780 885 aaKnown RBP23.51■■□□□ 1.35
CLK3-225ENST00000569063 KRT32Q14532 448 aa23.51■■□□□ 1.35
CLK3-225ENST00000569063 ARHGEF16Q5VV41 709 aa23.51■■□□□ 1.35
CLK3-225ENST00000569063 ERICH6BQ5W0A0 696 aa23.51■■□□□ 1.35
CLK3-225ENST00000569063 SLC43A3Q8NBI5 491 aa23.51■■□□□ 1.35
CLK3-225ENST00000569063 LRRC2Q9BYS8 371 aa23.51■■□□□ 1.35
CLK3-225ENST00000569063 SLC12A7Q9Y666 1083 aa23.51■■□□□ 1.35
CLK3-225ENST00000569063 TXNP10599 105 aaKnown RBP23.5■■□□□ 1.35
CLK3-225ENST00000569063 CPT1AP50416 773 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 TTLL4Q14679 1199 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 ADCK5Q3MIX3 580 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 LRIT3Q3SXY7 679 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 DHX32Q7L7V1 743 aaKnown RBP23.5■■□□□ 1.35
CLK3-225ENST00000569063 BADQ92934 168 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 KCNB2Q92953 911 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 RRP36Q96EU6 259 aaKnown RBP23.5■■□□□ 1.35
CLK3-225ENST00000569063 SEZ6LQ9BYH1 1024 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 TMEM39AQ9NV64 488 aa23.5■■□□□ 1.35
CLK3-225ENST00000569063 EIF3JO75822 258 aaKnown RBP23.49■■□□□ 1.35
CLK3-225ENST00000569063 NR3C2P08235 984 aa23.49■■□□□ 1.35
CLK3-225ENST00000569063 EIF2AK2P19525 551 aaKnown RBP23.49■■□□□ 1.35
CLK3-225ENST00000569063 ITGB8P26012 769 aa23.49■■□□□ 1.35
CLK3-225ENST00000569063 CCDC62Q6P9F0 684 aa23.49■■□□□ 1.35
CLK3-225ENST00000569063 SRBD1Q8N5C6 995 aaKnown RBP23.49■■□□□ 1.35
CLK3-225ENST00000569063 FANCBQ8NB91 859 aa23.49■■□□□ 1.35
CLK3-225ENST00000569063 OR6J1Q8NGC5 347 aa23.49■■□□□ 1.35
CLK3-225ENST00000569063 PPP4R2Q9NY27 417 aa23.49■■□□□ 1.35
CLK3-225ENST00000569063 GCOM1H8Y6P7 765 aaPredicted RBP23.48■■□□□ 1.35
CLK3-225ENST00000569063 SOX1O00570 391 aaPredicted RBP23.48■■□□□ 1.35
CLK3-225ENST00000569063 ARIH2O95376 493 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 PLEKHA8P1O95397 391 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 HMGB1P09429 215 aaKnown RBP23.48■■□□□ 1.35
CLK3-225ENST00000569063 POLR2MP0CAP2 368 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 HOXA13P31271 388 aaPredicted RBP23.48■■□□□ 1.35
CLK3-225ENST00000569063 ITGA7Q13683 1181 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 FAM126BQ8IXS8 530 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 PIBF1Q8WXW3 757 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 PDCD2LQ9BRP1 358 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 POLR3EQ9NVU0 708 aa23.48■■□□□ 1.35
CLK3-225ENST00000569063 A6NJR5 290 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 RAG1P15918 1043 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 RXRAP19793 462 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 HSPA4P34932 840 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 BRDTQ58F21 947 aaPredicted RBP23.47■■□□□ 1.35
CLK3-225ENST00000569063 SEPT14Q6ZU15 432 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 COPS5Q92905 334 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 SEC63Q9UGP8 760 aaKnown RBP23.47■■□□□ 1.35
CLK3-225ENST00000569063 TBX21Q9UL17 535 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 GRIN2DO15399 1336 aa23.47■■□□□ 1.35
CLK3-225ENST00000569063 BAZ2BQ9UIF8 2168 aaKnown RBP23.47■■□□□ 1.35
CLK3-225ENST00000569063 TLR3O15455 904 aaKnown RBP23.46■■□□□ 1.35
CLK3-225ENST00000569063 KPNA6O60684 536 aa23.46■■□□□ 1.35
CLK3-225ENST00000569063 CD4P01730 458 aa23.46■■□□□ 1.35
CLK3-225ENST00000569063 PURAQ00577 322 aaKnown RBP23.46■■□□□ 1.35
CLK3-225ENST00000569063 SYNE3Q6ZMZ3 975 aa23.46■■□□□ 1.35
CLK3-225ENST00000569063 CMTR1Q8N1G2 835 aaKnown RBP23.46■■□□□ 1.35
CLK3-225ENST00000569063 REC8O95072 547 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 TIMP1P01033 207 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 PGM5Q15124 567 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 LY6KQ17RY6 165 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 APOA5Q6Q788 366 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 TMTC3Q6ZXV5 915 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 VSIG10LQ86VR7 867 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 MICU3Q86XE3 530 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 TCEANC2Q96MN5 208 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 LAMA3Q16787 3333 aa23.45■■□□□ 1.34
CLK3-225ENST00000569063 PSMC6P62333 389 aa23.44■■□□□ 1.34
CLK3-225ENST00000569063 FCHSD1Q86WN1 690 aa23.44■■□□□ 1.34
CLK3-225ENST00000569063 RAB11FIP4Q86YS3 637 aa23.44■■□□□ 1.34
CLK3-225ENST00000569063 LRCH3Q96II8 777 aa23.44■■□□□ 1.34
CLK3-225ENST00000569063 MTG1Q9BT17 334 aaPredicted RBP23.44■■□□□ 1.34
CLK3-225ENST00000569063 DDX41Q9UJV9 622 aaKnown RBP23.44■■□□□ 1.34
CLK3-225ENST00000569063 BRPF3Q9ULD4 1205 aa23.44■■□□□ 1.34
CLK3-225ENST00000569063 EPB41L2O43491 1005 aaKnown RBP23.43■■□□□ 1.34
CLK3-225ENST00000569063 GH1P01241 217 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms