RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 DUSP28Q4G0W2 176 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 CCDC158Q5M9N0 1113 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 ERICH6BQ5W0A0 696 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 KIAA1211Q6ZU35 1233 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 PRPF38AQ8NAV1 312 aaKnown RBP13.55□□□□□ -0.24
CDH3-208ENST00000569036 DHX38Q92620 1227 aaKnown RBP13.55□□□□□ -0.24
CDH3-208ENST00000569036 DBNDD2Q9BQY9 259 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 SLC38A10Q9HBR0 1119 aa13.55□□□□□ -0.24
CDH3-208ENST00000569036 A1CFQ9NQ94 594 aaKnown RBP13.55□□□□□ -0.24
CDH3-208ENST00000569036 CTDP1Q9Y5B0 961 aaPredicted RBP13.55□□□□□ -0.24
CDH3-208ENST00000569036 USP17L12C9JPN9 530 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 USP17L21D6R901 530 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 ICAM3P32942 547 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 RBL2Q08999 1139 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 MYOCDQ8IZQ8 938 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 SMRP1Q8NCR6 262 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 COL26A1Q96A83 441 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 ZNF512BQ96KM6 892 aaPredicted RBP13.54□□□□□ -0.24
CDH3-208ENST00000569036 CCDC17Q96LX7 622 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 IGFLR1Q9H665 355 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 KANSL2Q9H9L4 492 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 VTA1Q9NP79 307 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 HDAC5Q9UQL6 1122 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 COG6Q9Y2V7 657 aa13.54□□□□□ -0.24
CDH3-208ENST00000569036 GREB1LQ9C091 1923 aaPredicted RBP13.54□□□□□ -0.24
CDH3-208ENST00000569036 BAZ2AQ9UIF9 1905 aaKnown RBP13.54□□□□□ -0.24
CDH3-208ENST00000569036 FAM208BQ5VWN6 2430 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 AMHP03971 560 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 NDUFV1P49821 464 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 RRP1P56182 461 aaKnown RBP13.53□□□□□ -0.24
CDH3-208ENST00000569036 ADAM15Q13444 863 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 KIAA2013Q8IYS2 634 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 OR6J1Q8NGC5 347 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 SSH1Q8WYL5 1049 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 KIFC2Q96AC6 838 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 MEIS3Q99687 375 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 CRNKL1Q9BZJ0 848 aaKnown RBP13.53□□□□□ -0.24
CDH3-208ENST00000569036 ACAD9Q9H845 621 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 INCENPQ9NQS7 918 aa13.53□□□□□ -0.24
CDH3-208ENST00000569036 MAGEB6P1A0A0J9YX57 407 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 CKBP12277 381 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 OAZ1P54368 228 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 MTX1Q13505 466 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 GDF6Q6KF10 455 aaPredicted RBP13.52□□□□□ -0.25
CDH3-208ENST00000569036 SDR42E1Q8WUS8 393 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 RPGRIP1Q96KN7 1286 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 YME1L1Q96TA2 773 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 PHF7Q9BWX1 381 aaPredicted RBP13.52□□□□□ -0.25
CDH3-208ENST00000569036 LMAN2LQ9H0V9 348 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 DCP1AQ9NPI6 582 aaPredicted RBP13.52□□□□□ -0.25
CDH3-208ENST00000569036 DLL3Q9NYJ7 618 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 CLEC1BQ9P126 229 aa13.52□□□□□ -0.25
CDH3-208ENST00000569036 RALYQ9UKM9 306 aaKnown RBP13.52□□□□□ -0.25
CDH3-208ENST00000569036 USP15Q9Y4E8 981 aaPredicted RBP13.52□□□□□ -0.25
CDH3-208ENST00000569036 FASNP49327 2511 aaKnown RBP13.51□□□□□ -0.25
CDH3-208ENST00000569036 GRM6O15303 877 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 NDUFB10O96000 172 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 CTNNB1P35222 781 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 CDK8P49336 464 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 COASYQ13057 564 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 MBTPS1Q14703 1052 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 TNNI3KQ59H18 835 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 TRAF7Q6Q0C0 670 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 WDR11Q9BZH6 1224 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 RNF146Q9NTX7 359 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 FPGT-TNNI3KV9GXZ4 949 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 OTOGLQ3ZCN5 2332 aa13.51□□□□□ -0.25
CDH3-208ENST00000569036 E9PSI1 815 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 C5orf67F2Z3F1 127 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 KPNA6O60684 536 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 LGR5O75473 907 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 CSPG5O95196 566 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 CHMP4BP1P59074 171 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 CCDC184Q52MB2 194 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 BRDTQ58F21 947 aaPredicted RBP13.5□□□□□ -0.25
CDH3-208ENST00000569036 TMED8Q6PL24 325 aaPredicted RBP13.5□□□□□ -0.25
CDH3-208ENST00000569036 MORC4Q8TE76 937 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 PCDHGC5Q9Y5F6 944 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 MYH4Q9Y623 1939 aa13.5□□□□□ -0.25
CDH3-208ENST00000569036 RAD50Q92878 1312 aa13.49□□□□□ -0.25
CDH3-208ENST00000569036 A6NJR5 290 aa13.49□□□□□ -0.25
CDH3-208ENST00000569036 F5H6K3 240 aa13.49□□□□□ -0.25
CDH3-208ENST00000569036 KLRC3Q07444 240 aa13.49□□□□□ -0.25
CDH3-208ENST00000569036 G3BP1Q13283 466 aaKnown RBP eCLIP13.49□□□□□ -0.25
CDH3-208ENST00000569036 SESTD1Q86VW0 696 aa13.49□□□□□ -0.25
CDH3-208ENST00000569036 C11orf84Q9BUA3 381 aaPredicted RBP13.49□□□□□ -0.25
CDH3-208ENST00000569036 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.49□□□□□ -0.25
CDH3-208ENST00000569036 ANTXR1Q9H6X2 564 aa13.49□□□□□ -0.25
CDH3-208ENST00000569036 GPR108Q9NPR9 543 aa13.49□□□□□ -0.25
CDH3-208ENST00000569036 RBM47A0AV96 593 aaKnown RBP13.48□□□□□ -0.25
CDH3-208ENST00000569036 ZNF618Q5T7W0 954 aa13.48□□□□□ -0.25
CDH3-208ENST00000569036 ASTLQ6HA08 431 aaPredicted RBP13.48□□□□□ -0.25
CDH3-208ENST00000569036 C16orf86Q6ZW13 317 aa13.48□□□□□ -0.25
CDH3-208ENST00000569036 ZBTB33Q86T24 672 aa13.48□□□□□ -0.25
CDH3-208ENST00000569036 DBF4BQ8NFT6 615 aa13.48□□□□□ -0.25
CDH3-208ENST00000569036 PURBQ96QR8 312 aaKnown RBP13.48□□□□□ -0.25
CDH3-208ENST00000569036 CYP2D7A0A087X1C5 515 aa13.47□□□□□ -0.25
CDH3-208ENST00000569036 UPP2O95045 317 aa13.47□□□□□ -0.25
CDH3-208ENST00000569036 RB1P06400 928 aa13.47□□□□□ -0.25
CDH3-208ENST00000569036 LINC00271P0C7V0 271 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms