RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CST5P28325 142 aaPredicted RBP17.42■□□□□ 0.38
VPS39-210ENST00000568357 GNAQP50148 359 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 HSD17B4P51659 736 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 ACLYP53396 1101 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 RTP1P59025 263 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 NKX3-2P78367 333 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 MDM2Q00987 491 aaPredicted RBP17.42■□□□□ 0.38
VPS39-210ENST00000568357 GHRHRQ02643 423 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 PDE4DQ08499 809 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 JAKMIP1Q96N16 626 aaKnown RBP17.42■□□□□ 0.38
VPS39-210ENST00000568357 RMDN3Q96TC7 470 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 USP26Q9BXU7 913 aa17.42■□□□□ 0.38
VPS39-210ENST00000568357 DYNC1LI2O43237 492 aaPredicted RBP17.41■□□□□ 0.38
VPS39-210ENST00000568357 HMGB1P09429 215 aaKnown RBP17.41■□□□□ 0.38
VPS39-210ENST00000568357 HOXA13P31271 388 aaPredicted RBP17.41■□□□□ 0.38
VPS39-210ENST00000568357 BEX3Q00994 111 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 SNX17Q15036 470 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 GNASQ5JWF2 1037 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 APOA5Q6Q788 366 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 MICU3Q86XE3 530 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 CCDC82Q8N4S0 544 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 NSUN6Q8TEA1 469 aaKnown RBP17.41■□□□□ 0.38
VPS39-210ENST00000568357 RRP36Q96EU6 259 aaKnown RBP17.41■□□□□ 0.38
VPS39-210ENST00000568357 WDR11Q9BZH6 1224 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 SPC25Q9HBM1 224 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 ATP11BQ9Y2G3 1177 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 LCTP09848 1927 aa17.41■□□□□ 0.38
VPS39-210ENST00000568357 ASGR1P07306 291 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 TRAF1Q13077 416 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 TRIM60Q495X7 471 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 DUSP28Q4G0W2 176 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 C1orf53Q5VUE5 145 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 FAM109BQ6ICB4 259 aaPredicted RBP17.4■□□□□ 0.38
VPS39-210ENST00000568357 SYNE3Q6ZMZ3 975 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 TLK2Q86UE8 772 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 MPHOSPH6Q99547 160 aaKnown RBP17.4■□□□□ 0.38
VPS39-210ENST00000568357 MAP3K20Q9NYL2 800 aaKnown RBP17.4■□□□□ 0.38
VPS39-210ENST00000568357 Q9Y3F1 56 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 LTBP2Q14767 1821 aa17.4■□□□□ 0.38
VPS39-210ENST00000568357 MCM3APO60318 1980 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 hCG_1642624A0A1W2PR95 340 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 MOXD2PA6NHM9 499 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 B4DLN1 442 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 EPB41L2O43491 1005 aaKnown RBP17.39■□□□□ 0.37
VPS39-210ENST00000568357 MRPL12P52815 198 aaKnown RBP17.39■□□□□ 0.37
VPS39-210ENST00000568357 ARHGEF16Q5VV41 709 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 Q6ZUG5 572 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 TMTC3Q6ZXV5 915 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 PCSK9Q8NBP7 692 aaKnown RBP17.39■□□□□ 0.37
VPS39-210ENST00000568357 IWS1Q96ST2 819 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 AP5M1Q9H0R1 490 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 PXMP2Q9NR77 195 aa17.39■□□□□ 0.37
VPS39-210ENST00000568357 KLF18A0A0U1RQI7 1052 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 GCOM1H8Y6P7 765 aaPredicted RBP17.38■□□□□ 0.37
VPS39-210ENST00000568357 ZBTB43O43298 467 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 NR3C2P08235 984 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 POLR2MP0CAP2 368 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 EIF2AK2P19525 551 aaKnown RBP17.38■□□□□ 0.37
VPS39-210ENST00000568357 TLE2Q04725 743 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 FSCN1Q16658 493 aaKnown RBP17.38■□□□□ 0.37
VPS39-210ENST00000568357 BLOC1S2Q6QNY1 142 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 SAMD3Q8N6K7 520 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 STARD7Q9NQZ5 370 aa17.38■□□□□ 0.37
VPS39-210ENST00000568357 FAM217BQ9NTX9 383 aaPredicted RBP17.38■□□□□ 0.37
VPS39-210ENST00000568357 CDH23Q9H251 3354 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 LAMA2P24043 3122 aaKnown RBP17.37■□□□□ 0.37
VPS39-210ENST00000568357 ARIH2O95376 493 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 RPS6KB1P23443 525 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 FUT2Q10981 343 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 STXBP2Q15833 593 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 ZNF697Q5TEC3 545 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 CXCL17Q6UXB2 119 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 SEPT14Q6ZU15 432 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 FCHSD1Q86WN1 690 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 SCFD2Q8WU76 684 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 COPS5Q92905 334 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 GLT1D1Q96MS3 346 aa17.37■□□□□ 0.37
VPS39-210ENST00000568357 SEC63Q9UGP8 760 aaKnown RBP17.37■□□□□ 0.37
VPS39-210ENST00000568357 EIF3JO75822 258 aaKnown RBP17.36■□□□□ 0.37
VPS39-210ENST00000568357 TXNP10599 105 aaKnown RBP17.36■□□□□ 0.37
VPS39-210ENST00000568357 CASTP20810 708 aaKnown RBP17.36■□□□□ 0.37
VPS39-210ENST00000568357 COL9A1P20849 921 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 PSMA5P28066 241 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 CDC27P30260 824 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 FGD1P98174 961 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 APOBRQ0VD83 1088 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 RTN1Q16799 776 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 CCDC62Q6P9F0 684 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 SH3RF1Q7Z6J0 888 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 POTEDQ86YR6 584 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 FBXL16Q8N461 479 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 MAFAQ8NHW3 353 aaPredicted RBP17.36■□□□□ 0.37
VPS39-210ENST00000568357 BRF1Q92994 677 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 VTI1AQ96AJ9 217 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 CDX2Q99626 313 aaPredicted RBP17.36■□□□□ 0.37
VPS39-210ENST00000568357 PDCD2LQ9BRP1 358 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 RBM28Q9NW13 759 aaKnown RBP17.36■□□□□ 0.37
VPS39-210ENST00000568357 RAPGEFL1Q9UHV5 662 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 ELP1O95163 1332 aa17.36■□□□□ 0.37
VPS39-210ENST00000568357 BAZ2BQ9UIF8 2168 aaKnown RBP17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms