RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 C16orf86Q6ZW13 317 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 NUP88Q99567 741 aaPredicted RBP13.27□□□□□ -0.29
CLN3-226ENST00000567160 UPF3BQ9BZI7 483 aaKnown RBP13.27□□□□□ -0.29
CLN3-226ENST00000567160 SLC38A10Q9HBR0 1119 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 RAVER2Q9HCJ3 691 aaKnown RBP13.27□□□□□ -0.29
CLN3-226ENST00000567160 ZMYM6O95789 1325 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 SIP14410 1827 aa13.27□□□□□ -0.29
CLN3-226ENST00000567160 ZNF213O14771 459 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 SLC27A2O14975 620 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 IQCF3P0C7M6 154 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 SMPD1P17405 629 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 CNTN2Q02246 1040 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 PPARAQ07869 468 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 BFSP2Q13515 415 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 IMMTQ16891 758 aaKnown RBP13.26□□□□□ -0.29
CLN3-226ENST00000567160 C12orf60Q5U649 245 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 CREB3L3Q68CJ9 461 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 FAM133AQ8N9E0 248 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 KIFC2Q96AC6 838 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 TGS1Q96RS0 853 aaKnown RBP13.26□□□□□ -0.29
CLN3-226ENST00000567160 ACAD9Q9H845 621 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 UPF2Q9HAU5 1272 aaKnown RBP13.26□□□□□ -0.29
CLN3-226ENST00000567160 ZDBF2Q9HCK1 2354 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 GPHNQ9NQX3 736 aaPredicted RBP13.26□□□□□ -0.29
CLN3-226ENST00000567160 PRKAG3Q9UGI9 489 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 CACNA1AO00555 2505 aa13.26□□□□□ -0.29
CLN3-226ENST00000567160 TET1Q8NFU7 2136 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 PTPRSQ13332 1948 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 F5H6K3 240 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 CYP21A2P08686 494 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 FDX1P10109 184 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 MCCP23508 829 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 HSPA4P34932 840 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 CPT1AP50416 773 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 PTPN5P54829 565 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 KLRC3Q07444 240 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 NECTIN1Q15223 517 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 BRDTQ58F21 947 aaPredicted RBP13.25□□□□□ -0.29
CLN3-226ENST00000567160 FAM47CQ5HY64 1035 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 HFE2Q6ZVN8 426 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 TBC1D10CQ8IV04 446 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 CCDC155Q8N6L0 562 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 PRRX2Q99811 253 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 SUGCTQ9HAC7 445 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 HOMER2Q9NSB8 354 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 FEM1BQ9UK73 627 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 MTUS1Q9ULD2 1270 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 NOD1Q9Y239 953 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 TAF6LQ9Y6J9 622 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 MYH4Q9Y623 1939 aa13.25□□□□□ -0.29
CLN3-226ENST00000567160 NDUFB10O96000 172 aa13.24□□□□□ -0.29
CLN3-226ENST00000567160 ERVK-21P61565 698 aa13.24□□□□□ -0.29
CLN3-226ENST00000567160 RNF20Q5VTR2 975 aa13.24□□□□□ -0.29
CLN3-226ENST00000567160 SPRED2Q7Z698 418 aa13.24□□□□□ -0.29
CLN3-226ENST00000567160 RAD9AQ99638 391 aa13.24□□□□□ -0.29
CLN3-226ENST00000567160 MTG1Q9BT17 334 aaPredicted RBP13.24□□□□□ -0.29
CLN3-226ENST00000567160 VTA1Q9NP79 307 aa13.24□□□□□ -0.29
CLN3-226ENST00000567160 INCENPQ9NQS7 918 aa13.24□□□□□ -0.29
CLN3-226ENST00000567160 TRIP12Q14669 1992 aaPredicted RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 GREB1LQ9C091 1923 aaPredicted RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 LCHNA4D1U4 455 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 EPB41L2O43491 1005 aaKnown RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 SLC3A2P08195 630 aaKnown RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 WDR5P61964 334 aaKnown RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 PURAQ00577 322 aaKnown RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 PTPROQ16827 1216 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 NFRKBQ6P4R8 1299 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 FBXO16Q8IX29 292 aaPredicted RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 RASEFQ8IZ41 740 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 NEK9Q8TD19 979 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 C22orf23Q9BZE7 217 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 A1CFQ9NQ94 594 aaKnown RBP13.23□□□□□ -0.29
CLN3-226ENST00000567160 TOMM22Q9NS69 142 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 NYAP2Q9P242 653 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 ANAPC4Q9UJX5 808 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 SCN10AQ9Y5Y9 1956 aa13.23□□□□□ -0.29
CLN3-226ENST00000567160 USP34Q70CQ2 3546 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 SOWAHBA6NEL2 793 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 PRDM1O75626 825 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 PARNO95453 639 aaKnown RBP13.22□□□□□ -0.29
CLN3-226ENST00000567160 MYL3P08590 195 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 ZP2Q05996 745 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 PTPN11Q06124 597 aaPredicted RBP13.22□□□□□ -0.29
CLN3-226ENST00000567160 PKN1Q16512 942 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 TKFCQ3LXA3 575 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 DUSP28Q4G0W2 176 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 TIGD5Q53EQ6 642 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 RRP12Q5JTH9 1297 aaKnown RBP13.22□□□□□ -0.29
CLN3-226ENST00000567160 TAPT1Q6NXT6 567 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 STOX1Q6ZVD7 989 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 EEPD1Q7L9B9 569 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 ADHFE1Q8IWW8 467 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 POP1Q99575 1024 aaKnown RBP13.22□□□□□ -0.29
CLN3-226ENST00000567160 PDGFCQ9NRA1 345 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 RNF146Q9NTX7 359 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 SNX14Q9Y5W7 946 aa13.22□□□□□ -0.29
CLN3-226ENST00000567160 NEDD4P46934 1319 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 LINC01553A4QN01 128 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 E7EWF7 191 aa13.21□□□□□ -0.29
CLN3-226ENST00000567160 H3BQ06 376 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms