RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 LOC102724159A0A0B4J2E5 919 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 PIK3CDO00329 1044 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 CFBP00751 764 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 IFNAR1P17181 557 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 SMPD1P17405 629 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 CLK2P49760 499 aaKnown RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 GNAQP50148 359 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 CCT2P78371 535 aaKnown RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 MRPS9P82933 396 aaKnown RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 SEMA3FQ13275 785 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 PWP2Q15269 919 aaKnown RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 LRRC41Q15345 812 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 UBE2SQ16763 222 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 ME3Q16798 604 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 CCDC62Q6P9F0 684 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 EEPD1Q7L9B9 569 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 ANKLE1Q8NAG6 615 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 DNERQ8NFT8 737 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 RRP36Q96EU6 259 aaKnown RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 ZNF274Q96GC6 653 aaPredicted RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 PAWRQ96IZ0 340 aaKnown RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 ZFP91Q96JP5 570 aaPredicted RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 AIFM3Q96NN9 605 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 PDCD2LQ9BRP1 358 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 TANC1Q9C0D5 1861 aa11.39□□□□□ -0.59
CLN3-220ENST00000566040 ZHX1Q9UKY1 873 aaPredicted RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 V9GY48 417 aaPredicted RBP11.39□□□□□ -0.59
CLN3-220ENST00000566040 ASB14A6NK59 587 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 PFKFB2O60825 505 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 PGK1P00558 417 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 AKR1A1P14550 325 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 EIF2AK2P19525 551 aaKnown RBP11.38□□□□□ -0.59
CLN3-220ENST00000566040 PGM5Q15124 567 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 PFKFB3Q16875 520 aaPredicted RBP11.38□□□□□ -0.59
CLN3-220ENST00000566040 CRYGNQ8WXF5 182 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 COPS5Q92905 334 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 BCAS3Q9H6U6 928 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 VTA1Q9NP79 307 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 TELO2Q9Y4R8 837 aa11.38□□□□□ -0.59
CLN3-220ENST00000566040 LAMA2P24043 3122 aaKnown RBP11.38□□□□□ -0.59
CLN3-220ENST00000566040 PRPF3O43395 683 aaKnown RBP11.37□□□□□ -0.59
CLN3-220ENST00000566040 DUSP11O75319 330 aaKnown RBP11.37□□□□□ -0.59
CLN3-220ENST00000566040 TFRCP02786 760 aaKnown RBP11.37□□□□□ -0.59
CLN3-220ENST00000566040 FDPSP14324 419 aaKnown RBP11.37□□□□□ -0.59
CLN3-220ENST00000566040 CST5P28325 142 aaPredicted RBP11.37□□□□□ -0.59
CLN3-220ENST00000566040 CNGA1P29973 690 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 GJA9P57773 515 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 STK3Q13188 491 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 SNX17Q15036 470 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 TBC1D32Q96NH3 1257 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 RMDN3Q96TC7 470 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 RNF26Q9BY78 433 aaPredicted RBP11.37□□□□□ -0.59
CLN3-220ENST00000566040 BACH2Q9BYV9 841 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 C22orf23Q9BZE7 217 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 BARHL2Q9NY43 387 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 CNPY2Q9Y2B0 182 aa11.37□□□□□ -0.59
CLN3-220ENST00000566040 RBAK-RBAKDNI3L0D1 243 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 M0R2N6 131 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 DNM1LO00429 736 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 MSCO60682 206 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 NR3C2P08235 984 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 SCG2P13521 617 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 SP2Q02086 613 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 MLLT1Q03111 559 aaPredicted RBP11.36□□□□□ -0.59
CLN3-220ENST00000566040 ARHGAP1Q07960 439 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 PPP2R5BQ15173 497 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 LRRC26Q2I0M4 334 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 PPP1R18Q6NYC8 613 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 HEATR3Q7Z4Q2 680 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 VSIG10LQ86VR7 867 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 MCF2L2Q86YR7 1114 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 NECAB1Q8N987 351 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 GTF3C6Q969F1 213 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 PGBD1Q96JS3 809 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 RIC8AQ9NPQ8 531 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 XPNPEP3Q9NQH7 507 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 GJB4Q9NTQ9 266 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 TMEM260Q9NX78 707 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 MAP3K20Q9NYL2 800 aaKnown RBP11.36□□□□□ -0.59
CLN3-220ENST00000566040 ADD3Q9UEY8 706 aaKnown RBP11.36□□□□□ -0.59
CLN3-220ENST00000566040 PHF24Q9UPV7 400 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 SCN5AQ14524 2016 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 LAMA3Q16787 3333 aa11.36□□□□□ -0.59
CLN3-220ENST00000566040 GRIN2DO15399 1336 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 ESYT2A0FGR8 921 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 GCOM1H8Y6P7 765 aaPredicted RBP11.35□□□□□ -0.59
CLN3-220ENST00000566040 POLR2MP0CAP2 368 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 NEK4P51957 841 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 BEX3Q00994 111 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 DUSP28Q4G0W2 176 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 SYNE3Q6ZMZ3 975 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 NOL8Q76FK4 1167 aaKnown RBP11.35□□□□□ -0.59
CLN3-220ENST00000566040 FCHSD1Q86WN1 690 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 SAMD3Q8N6K7 520 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 NSUN7Q8NE18 718 aaKnown RBP11.35□□□□□ -0.59
CLN3-220ENST00000566040 NSUN6Q8TEA1 469 aaKnown RBP11.35□□□□□ -0.59
CLN3-220ENST00000566040 INPP4AQ96PE3 977 aaPredicted RBP11.35□□□□□ -0.59
CLN3-220ENST00000566040 IWS1Q96ST2 819 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 ZMYND12Q9H0C1 365 aa11.35□□□□□ -0.59
CLN3-220ENST00000566040 SEC63Q9UGP8 760 aaKnown RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms