RNA–Protein interactions for RNA: ENST00000564288.5

MACF1-231, Transcript of microtubule-actin crosslinking factor 1, human

APPRIS ALT2 TSL 5 BASIC

Gene MACF1, Length 24,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-231	ENST00000564288	LRRC7	Q96NW7	1537 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	POLR2E	P19388	210 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	STRN3	Q13033	797 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	MYLK4	Q86YV6	388 aa	Predicted RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	NQO1	P15559	274 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	KLHL30	Q0D2K2	578 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	SPARCL1	Q14515	664 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	SH3TC2	Q8TF17	1288 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	MEIS3	Q99687	375 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	AP4S1	Q9Y587	144 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	FRMD3	A2A2Y4	597 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	RFX1	P22670	979 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	GUCY2F	P51841	1108 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	TMEM266	Q2M3C6	531 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	SPATA21	Q7Z572	469 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	LONP2	Q86WA8	852 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CCDC8	Q9H0W5	538 aa	Predicted RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	GAS8	O95995	478 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	COPB1	P53618	953 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	SIRT2	Q8IXJ6	389 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	TAF5L	O75529	589 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	H2AFZ	P0C0S5	128 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	C16orf87	Q6PH81	154 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	H2AFV	Q71UI9	128 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CTAGE3P	Q8IX95	158 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	KCNB2	Q92953	911 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ATAD3A	Q9NVI7	634 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	DLGAP2	Q9P1A6	1054 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	NCOA3	Q9Y6Q9	1424 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	PEX5	P50542	639 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	PDXDC1	Q6P996	788 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CCDC105	Q8IYK2	499 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CLMN	Q96JQ2	1002 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	EHMT1	Q9H9B1	1298 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	RTL9	Q8NET4	1388 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	STAT6	P42226	847 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	NCAPH2	Q6IBW4	605 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	TAF1D	Q9H5J8	278 aa	Predicted RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	EHHADH	Q08426	723 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	LINS1	Q8NG48	757 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ATP2A3	Q93084	1043 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	MAGOHB	Q96A72	148 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	MAN1A2	O60476	641 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ITIH2	P19823	946 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	SLITRK6	Q9H5Y7	841 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	AGT	P01019	485 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	SERPINB8	P50452	374 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ANKLE2	Q86XL3	938 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	PCDH18	Q9HCL0	1135 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	ATG3	Q9NT62	314 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	CDC42BPA	Q5VT25	1732 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	HSPA8	P11142	646 aa	Known RBP	4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	GNA11	P29992	359 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	RASSF3	Q86WH2	238 aa		4.63	□□□□□ -1.67
MACF1-231	ENST00000564288	NELFB	Q8WX92	580 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	TRAPPC9	Q96Q05	1148 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288		I3L4J1	428 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	ZMYND10	O75800	440 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	CYFIP2	Q96F07	1278 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	RILP	Q96NA2	401 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	NPAT	Q14207	1427 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	SERPING1	P05155	500 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	GSPT1	P15170	499 aa	Known RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	SYDE1	Q6ZW31	735 aa	Predicted RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	PALMD	Q9NP74	551 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	XPO6	Q96QU8	1125 aa	Known RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	ERVK-7	P63135	1459 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	SYCP2	Q9BX26	1530 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	SH2D4A	Q9H788	454 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	CABP2	Q9NPB3	220 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	TRAF3IP3	Q9Y228	551 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	PENK	P01210	267 aa	Predicted RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	CCDC166	P0CW27	439 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	KRT3	P12035	628 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	PLCG2	P16885	1265 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	ICA1L	Q8NDH6	482 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	SYN2	Q92777	582 aa	Predicted RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	THAP11	Q96EK4	314 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	ETNK1	Q9HBU6	452 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	LRCH1	Q9Y2L9	728 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	ADCY8	P40145	1251 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	MORC3	Q14149	939 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	LONRF3	Q496Y0	759 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	KLHL7	Q8IXQ5	586 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	DENND4B	O75064	1496 aa	Predicted RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	PTPDC1	A2A3K4	754 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	ARHGAP42	A6NI28	874 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288		H0Y626	953 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	LSM1	O15116	133 aa	Known RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	TRIM16	O95361	564 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	LRGUK	Q96M69	825 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	METTL14	Q9HCE5	456 aa	Known RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	INO80	Q9ULG1	1556 aa	Predicted RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	PHF20L1	A8MW92	1017 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	SAR1A	Q9NR31	198 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	SMIM31	A0A1B0GVY4	71 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	DCTN2	Q13561	401 aa	Known RBP	4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	A2M	P01023	1474 aa		4.62	□□□□□ -1.67
MACF1-231	ENST00000564288	FKBP3	Q00688	224 aa	Known RBP	4.62	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms