RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 TMTC3Q6ZXV5 915 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 TLK2Q86UE8 772 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 FBXL16Q8N461 479 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 SCFD2Q8WU76 684 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 PIBF1Q8WXW3 757 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 CUL5Q93034 780 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 FERMT2Q96AC1 680 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 GLT1D1Q96MS3 346 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 TAAR1Q96RJ0 339 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 WDR11Q9BZH6 1224 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 PDGFCQ9NRA1 345 aa15.47■□□□□ 0.07
CLK3-213ENST00000563842 GNEQ9Y223 722 aaKnown RBP15.47■□□□□ 0.07
CLK3-213ENST00000563842 CUL9Q8IWT3 2517 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.46■□□□□ 0.07
CLK3-213ENST00000563842 A0A1W2PQ45 241 aaPredicted RBP15.46■□□□□ 0.07
CLK3-213ENST00000563842 A0A1W2PQY0 241 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 GOLGA8AA7E2F4 631 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 GOLGA8BA8MQT2 603 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 OPLAHO14841 1288 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 SMPD1P17405 629 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 ACLYP53396 1101 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 TTLL4Q14679 1199 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 BRDTQ58F21 947 aaPredicted RBP15.46■□□□□ 0.07
CLK3-213ENST00000563842 TM6SF1Q9BZW5 370 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 STARD7Q9NQZ5 370 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 PXMP2Q9NR77 195 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 COL20A1Q9P218 1284 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 PRKAG2Q9UGJ0 569 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 BRPF3Q9ULD4 1205 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 NAP1L2Q9ULW6 460 aaPredicted RBP15.46■□□□□ 0.07
CLK3-213ENST00000563842 A0A0C4DFX4 3053 aa15.46■□□□□ 0.07
CLK3-213ENST00000563842 ELP1O95163 1332 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 DYNC1LI2O43237 492 aaPredicted RBP15.45■□□□□ 0.06
CLK3-213ENST00000563842 ADCY6O43306 1168 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 EIF3JO75822 258 aaKnown RBP15.45■□□□□ 0.06
CLK3-213ENST00000563842 CABYRO75952 493 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 ASGR1P07306 291 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 NR3C2P08235 984 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 EIF2AK2P19525 551 aaKnown RBP15.45■□□□□ 0.06
CLK3-213ENST00000563842 RTP1P59025 263 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 SNX17Q15036 470 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 CCSAPQ6IQ19 270 aaPredicted RBP15.45■□□□□ 0.06
CLK3-213ENST00000563842 RUFY3Q7L099 469 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 RAB11FIP4Q86YS3 637 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 CCDC82Q8N4S0 544 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 BRF1Q92994 677 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 AGXT2Q9BYV1 514 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 CYP46A1Q9Y6A2 500 aa15.45■□□□□ 0.06
CLK3-213ENST00000563842 DDX49Q9Y6V7 483 aaKnown RBP15.45■□□□□ 0.06
CLK3-213ENST00000563842 hCG_1984214I3L0E3 225 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 TXNP10599 105 aaKnown RBP15.44■□□□□ 0.06
CLK3-213ENST00000563842 CPA1P15085 419 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 HOXA13P31271 388 aaPredicted RBP15.44■□□□□ 0.06
CLK3-213ENST00000563842 CPT1AP50416 773 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 METAP2P50579 478 aaKnown RBP eCLIP15.44■□□□□ 0.06
CLK3-213ENST00000563842 FSCN1Q16658 493 aaKnown RBP15.44■□□□□ 0.06
CLK3-213ENST00000563842 KCNV1Q6PIU1 500 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 TEX2Q8IWB9 1127 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 CMTR1Q8N1G2 835 aaKnown RBP15.44■□□□□ 0.06
CLK3-213ENST00000563842 ZNF713Q8N859 430 aaPredicted RBP15.44■□□□□ 0.06
CLK3-213ENST00000563842 SLC17A8Q8NDX2 589 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 SMARCC2Q8TAQ2 1214 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 VTI1AQ96AJ9 217 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 PDCD2LQ9BRP1 358 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 SEZ6LQ9BYH1 1024 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 ZSWIM6Q9HCJ5 1215 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 ATP11BQ9Y2G3 1177 aa15.44■□□□□ 0.06
CLK3-213ENST00000563842 MROH7Q68CQ1 1323 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 MYADML2A6NDP7 307 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 CCND2P30279 289 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 APOBRQ0VD83 1088 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 FCHSD1Q86WN1 690 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 OR6J1Q8NGC5 347 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 POLR3EQ9NVU0 708 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 RBM27Q9P2N5 1060 aaKnown RBP15.43■□□□□ 0.06
CLK3-213ENST00000563842 ZMYND8Q9ULU4 1186 aaPredicted RBP15.43■□□□□ 0.06
CLK3-213ENST00000563842 DNAH12Q6ZR08 3092 aa15.43■□□□□ 0.06
CLK3-213ENST00000563842 A0A0U1RQG5 324 aaPredicted RBP15.42■□□□□ 0.06
CLK3-213ENST00000563842 PIK3CDO00329 1044 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 STAM2O75886 525 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 MYCLP12524 364 aaPredicted RBP15.42■□□□□ 0.06
CLK3-213ENST00000563842 ANAPC15P60006 121 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 BEX3Q00994 111 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 PGM5Q15124 567 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 TRIM60Q495X7 471 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 SEPT14Q6ZU15 432 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 PSTPIP2Q9H939 334 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 CNTNAP5Q8WYK1 1306 aa15.42■□□□□ 0.06
CLK3-213ENST00000563842 NID2Q14112 1375 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 DCDC2CA8MYV0 355 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 CTAGE5O15320 804 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 KPNA6O60684 536 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 PPP1R18Q6NYC8 613 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 XRRA1Q6P2D8 792 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 CHRDL2Q6WN34 429 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 HEATR3Q7Z4Q2 680 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 VSIG10LQ86VR7 867 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 TOX2Q96NM4 488 aa15.41■□□□□ 0.06
CLK3-213ENST00000563842 LBHD1Q9BQE6 289 aaPredicted RBP15.41■□□□□ 0.06
CLK3-213ENST00000563842 GLT8D2Q9H1C3 349 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms