RNA–Protein interactions for RNA: ENST00000563623.5

ABCA3-203, Transcript of ATP binding cassette subfamily A member 3, humanhuman

TSL 1 (best)

Gene ABCA3, Length 3,649 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3-203ENST00000563623 RETREG2Q8NC44 543 aa13.1□□□□□ -0.31
ABCA3-203ENST00000563623 ARL8AQ96BM9 186 aa13.1□□□□□ -0.31
ABCA3-203ENST00000563623 NSUN4Q96CB9 384 aaKnown RBP13.1□□□□□ -0.31
ABCA3-203ENST00000563623 NFU1Q9UMS0 254 aa13.1□□□□□ -0.31
ABCA3-203ENST00000563623 MINPP1Q9UNW1 487 aa13.1□□□□□ -0.31
ABCA3-203ENST00000563623 PRPF6O94906 941 aaKnown RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 RAPGEF1Q13905 1077 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 KCTD19Q17RG1 926 aaPredicted RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 NELFCDQ8IXH7 590 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 FNBP4Q8N3X1 1017 aaPredicted RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 NOX5Q96PH1 765 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 TSG101Q99816 390 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 EPB41L5Q9HCM4 733 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 C6orf50Q9HD87 102 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 ARPP21Q9UBL0 812 aaPredicted RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 PACSIN2Q9UNF0 486 aaPredicted RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 TNS2Q63HR2 1409 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 EPHB6O15197 1021 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 TCP1P17987 556 aaKnown RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 NOP2P46087 812 aaKnown RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 AARSP49588 968 aaKnown RBP eCLIP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 EFCAB13Q8IY85 973 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 ANKIB1Q9P2G1 1089 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 NUP188Q5SRE5 1749 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 A0A087WUV0 522 aaPredicted RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 ZNF263O14978 683 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 KRT14P02533 472 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 KRT18P05783 430 aaKnown RBP13.09□□□□□ -0.31
ABCA3-203ENST00000563623 DIXDC1Q155Q3 683 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 VWA3BQ502W6 1294 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 USP17L2Q6R6M4 530 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 C4orf32Q8N8J7 132 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 TAF4BQ92750 862 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 ATP8A2Q9NTI2 1148 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 ARHGAP20Q9P2F6 1191 aa13.09□□□□□ -0.31
ABCA3-203ENST00000563623 ORC4O43929 436 aa13.08□□□□□ -0.31
ABCA3-203ENST00000563623 TNNI2P48788 182 aa13.08□□□□□ -0.31
ABCA3-203ENST00000563623 ODF2Q5BJF6 829 aa13.08□□□□□ -0.31
ABCA3-203ENST00000563623 OTUD6BQ8N6M0 293 aa13.08□□□□□ -0.31
ABCA3-203ENST00000563623 TBCKQ8TEA7 893 aa13.08□□□□□ -0.31
ABCA3-203ENST00000563623 STIM2Q9P246 746 aa13.08□□□□□ -0.31
ABCA3-203ENST00000563623 LOC102724428A0A0B4J2F2 783 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 ZSCAN5CA6NGD5 496 aaPredicted RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 AGPSO00116 658 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 HEXIM1O94992 359 aaKnown RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 ADAMTS2O95450 1211 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 NTSR2O95665 410 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 FGFR1OPO95684 399 aaKnown RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 CCDC172P0C7W6 258 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 SLC1A4P43007 532 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 EPHB4P54760 987 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 EIF6P56537 245 aaKnown RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 SIK1P57059 783 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 EHHADHQ08426 723 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 KRT12Q99456 494 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 CCSER1Q9C0I3 900 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 RBM12Q9NTZ6 932 aaKnown RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 KBTBD4Q9NVX7 518 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 TMEM260Q9NX78 707 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 MYH10P35580 1976 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 GOLGA8KD6RF30 607 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 PCP11498 1178 aaKnown RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 MMP14P50281 582 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 MEA1Q16626 185 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 TMEM266Q2M3C6 531 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 RCSD1Q6JBY9 416 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 CREG2Q8IUH2 290 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 TSEN2Q8NCE0 465 aaKnown RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 PROCA1Q8NCQ7 364 aaPredicted RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 ZNF384Q8TF68 577 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 SH2D4AQ9H788 454 aa13.08□□□□□ -0.32
ABCA3-203ENST00000563623 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 BAZ2AQ9UIF9 1905 aaKnown RBP13.08□□□□□ -0.32
ABCA3-203ENST00000563623 GOLGA6L10A6NI86 522 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 ATP2C2O75185 946 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 CAMTA2O94983 1202 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 POLR2FP61218 127 aaKnown RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 SETQ01105 290 aaPredicted RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 NNTQ13423 1086 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 CFAP221Q4G0U5 840 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 FBXW10Q5XX13 1052 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 NEK8Q86SG6 692 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 HOMEZQ8IX15 550 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 MSL3Q8N5Y2 521 aaKnown RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 SNX29Q8TEQ0 813 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 LUC7LQ9NQ29 371 aaKnown RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 CAPN7Q9Y6W3 813 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 TMCO5BA8MYB1 307 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 RPS6KA5O75582 802 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 RPS8P62241 208 aaKnown RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 CACNB1Q02641 598 aaPredicted RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 SF3A3Q12874 501 aaKnown RBP eCLIP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 KRT25Q7Z3Z0 450 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 IFT20Q8IY31 132 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 SEMA6BQ9H3T3 888 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 ECM29Q5VYK3 1845 aa13.07□□□□□ -0.32
ABCA3-203ENST00000563623 LDHBP07195 334 aaKnown RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 CARSP49589 748 aaKnown RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 CCDC84Q86UT8 332 aaPredicted RBP13.07□□□□□ -0.32
ABCA3-203ENST00000563623 POTEDQ86YR6 584 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms