RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 ARL6IP4Q66PJ3 421 aaKnown RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 MOXD1Q6UVY6 613 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 SLC30A10Q6XR72 485 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 CCAR1Q8IX12 1150 aaKnown RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 FSIP1Q8NA03 581 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 ZNF784Q8NCA9 323 aaPredicted RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 CHST13Q8NET6 341 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 GTF3C2Q8WUA4 911 aaPredicted RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 MRPS27Q92552 414 aaKnown RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 FERMT2Q96AC1 680 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 HHIPL1Q96JK4 782 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 NAP1L4Q99733 375 aaKnown RBP15.42■□□□□ 0.06
VPS39-206ENST00000562662 PAGR1Q9BTK6 254 aa15.42■□□□□ 0.06
VPS39-206ENST00000562662 KIAA1217Q5T5P2 1943 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 MANSC4A6NHS7 340 aaPredicted RBP15.41■□□□□ 0.06
VPS39-206ENST00000562662 FAM155AB1AL88 458 aaPredicted RBP15.41■□□□□ 0.06
VPS39-206ENST00000562662 LAD1O00515 517 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 NEMFO60524 1076 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 CMA1P23946 247 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 CIITAP33076 1130 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 PRPHP41219 470 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 IL17AQ16552 155 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 RESP18Q5W5W9 173 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 SHC4Q6S5L8 630 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 NSMFQ6X4W1 530 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 RNF207Q6ZRF8 634 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS39-206ENST00000562662 POTEDQ86YR6 584 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 ZNF579Q8NAF0 562 aaKnown RBP15.41■□□□□ 0.06
VPS39-206ENST00000562662 MOV10L1Q9BXT6 1211 aaKnown RBP15.41■□□□□ 0.06
VPS39-206ENST00000562662 EHMT1Q9H9B1 1298 aa15.41■□□□□ 0.06
VPS39-206ENST00000562662 LRRC37A2A6NM11 1700 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 PLXNA1Q9UIW2 1896 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 FAM237AA0A1B0GTK4 181 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 OR52Z1P0C646 297 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 BAATQ14032 418 aaPredicted RBP15.4■□□□□ 0.06
VPS39-206ENST00000562662 Q3C1V9 767 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 CAVIN1Q6NZI2 390 aaKnown RBP15.4■□□□□ 0.06
VPS39-206ENST00000562662 ENGASEQ8NFI3 743 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 MTMR9Q96QG7 549 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 CSRNP2Q9H175 543 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 A1CFQ9NQ94 594 aaKnown RBP15.4■□□□□ 0.06
VPS39-206ENST00000562662 TMEM63CQ9P1W3 806 aa15.4■□□□□ 0.06
VPS39-206ENST00000562662 DDX25Q9UHL0 483 aaKnown RBP15.4■□□□□ 0.06
VPS39-206ENST00000562662 ABT1Q9ULW3 272 aaKnown RBP15.4■□□□□ 0.06
VPS39-206ENST00000562662 A0A1B0GVL5 298 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 VWA3AA6NCI4 1184 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 IGF2BP3O00425 579 aaKnown RBP eCLIP15.39■□□□□ 0.05
VPS39-206ENST00000562662 NR1I2O75469 434 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 SLC25A27O95847 323 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 COPB2P35606 906 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 ERVK-9P63128 1117 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 ERVK-24P63145 666 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 SNW1Q13573 536 aaKnown RBP15.39■□□□□ 0.05
VPS39-206ENST00000562662 Q4G0T1 1027 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 CCDC102AQ96A19 550 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 LENG9Q96B70 501 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 TAAR1Q96RJ0 339 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 PARK7Q99497 189 aaKnown RBP15.39■□□□□ 0.05
VPS39-206ENST00000562662 R3HDMLQ9H3Y0 253 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 ZCCHC17Q9NP64 241 aaKnown RBP15.39■□□□□ 0.05
VPS39-206ENST00000562662 CYP39A1Q9NYL5 469 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 FBXO40Q9UH90 709 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 HPSEQ9Y251 543 aa15.39■□□□□ 0.05
VPS39-206ENST00000562662 FAM86B1E9PN63 330 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 FAM86B2P0C5J1 330 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 PFKFB1P16118 471 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 ERCC3P19447 782 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 GCLCP48506 637 aaPredicted RBP15.38■□□□□ 0.05
VPS39-206ENST00000562662 NDUFA8P51970 172 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 UBXN2AP68543 259 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 FAM160A1Q05DH4 1040 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 CALCRLQ16602 461 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 SPECC1Q5M775 1068 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 DTHD1Q6ZMT9 781 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 CCDC73Q6ZRK6 1079 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 NCAPG2Q86XI2 1143 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 SMCR8Q8TEV9 937 aaPredicted RBP15.38■□□□□ 0.05
VPS39-206ENST00000562662 PURBQ96QR8 312 aaKnown RBP15.38■□□□□ 0.05
VPS39-206ENST00000562662 KCNMB3Q9NPA1 279 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 MORF4L1Q9UBU8 362 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 ADGRA2Q96PE1 1338 aa15.38■□□□□ 0.05
VPS39-206ENST00000562662 IGLV3-22A0A075B6J6 115 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 LONP1P36776 959 aaKnown RBP15.37■□□□□ 0.05
VPS39-206ENST00000562662 USP49Q70CQ1 688 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 FMR1NBQ8N0W7 255 aaPredicted RBP15.37■□□□□ 0.05
VPS39-206ENST00000562662 SHCBP1Q8NEM2 672 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 IL31RAQ8NI17 732 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 HAS1Q92839 578 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 PXMP2Q9NR77 195 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 DDX19AQ9NUU7 478 aaKnown RBP15.37■□□□□ 0.05
VPS39-206ENST00000562662 DACT1Q9NYF0 836 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 PFASO15067 1338 aa15.37■□□□□ 0.05
VPS39-206ENST00000562662 MCM3APO60318 1980 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 EIF2AK2P19525 551 aaKnown RBP15.36■□□□□ 0.05
VPS39-206ENST00000562662 INHBEP58166 350 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 PGM5Q15124 567 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 PRR16Q569H4 304 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 CCDC183Q5T5S1 534 aa15.36■□□□□ 0.05
VPS39-206ENST00000562662 PCNX4Q63HM2 1172 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms