RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 LRRC41Q15345 812 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 DEFB115Q30KQ5 88 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 MFSD14CQ5VZR4 134 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 ADALQ6DHV7 355 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 SGMS1Q86VZ5 419 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 WDR11Q9BZH6 1224 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 TAF1DQ9H5J8 278 aaPredicted RBP10.28□□□□□ -0.76
VPS39-205ENST00000562258 K7ENM7 598 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 NEBLO76041 1014 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 ADCY5O95622 1261 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 TRPC3Q13507 836 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 VGLL4Q14135 290 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 CNNM4Q6P4Q7 775 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 ZBTB8OSQ8IWT0 167 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 DNAI2Q9GZS0 605 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 PRDM5Q9NQX1 630 aaPredicted RBP10.28□□□□□ -0.76
VPS39-205ENST00000562258 VCAM1P19320 739 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 NDUFA8P51970 172 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 EXOSC10Q01780 885 aaKnown RBP10.28□□□□□ -0.76
VPS39-205ENST00000562258 CCDC173Q0VFZ6 552 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 SREBF2Q12772 1141 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 DGKZQ13574 1117 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 CHADLQ6NUI6 762 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 BANK1Q8NDB2 785 aa10.28□□□□□ -0.76
VPS39-205ENST00000562258 EGFRP00533 1210 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 DLATP10515 647 aaKnown RBP10.27□□□□□ -0.76
VPS39-205ENST00000562258 SHMT1P34896 483 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 LIG4P49917 911 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 RHBDL3P58872 404 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 RPS6P62753 249 aaKnown RBP10.27□□□□□ -0.76
VPS39-205ENST00000562258 UBXN1Q04323 297 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 LRMPQ12912 555 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 LONRF3Q496Y0 759 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 SWSAP1Q6NVH7 229 aa10.27□□□□□ -0.76
VPS39-205ENST00000562258 IPO5O00410 1097 aaKnown RBP10.27□□□□□ -0.77
VPS39-205ENST00000562258 DESP17661 470 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 SKIDA1Q1XH10 827 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 FAM200AQ8TCP9 573 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 TMEM106CQ9BVX2 250 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 JMJD4Q9H9V9 463 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 BARHL2Q9NY43 387 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 BICDL2A1A5D9 508 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 PDHXO00330 501 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 HNRNPDLO14979 420 aaKnown RBP10.27□□□□□ -0.77
VPS39-205ENST00000562258 NR3C2P08235 984 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 TTLL4Q14679 1199 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 SLC39A14Q15043 492 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 MIS18BP1Q6P0N0 1132 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 NLRP7Q8WX94 980 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 SPATA33Q96N06 139 aa10.27□□□□□ -0.77
VPS39-205ENST00000562258 GTPBP4Q9BZE4 634 aaKnown RBP10.27□□□□□ -0.77
VPS39-205ENST00000562258 PP2D1A8MPX8 630 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 GCFC2P16383 781 aaKnown RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 MCM6Q14566 821 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 SHROOM1Q2M3G4 852 aaPredicted RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 TICAM2Q86XR7 235 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 SMYD4Q8IYR2 804 aaPredicted RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 NUDT12Q9BQG2 462 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 ADPGKQ9BRR6 497 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 IFNKQ9P0W0 207 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 TCRBV5S4A2TA0A5A2 114 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 EPB41P11171 864 aaKnown RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 TROAPQ12815 778 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 CUL4AQ13619 759 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 GNASQ5JWF2 1037 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 CYFIP1Q7L576 1253 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 ABI1Q8IZP0 508 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 SMC1BQ8NDV3 1235 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 GGPS1O95749 300 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 KRT5P13647 590 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 FMR1Q06787 632 aaKnown RBP eCLIP10.26□□□□□ -0.77
VPS39-205ENST00000562258 SPAG1Q07617 926 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 CYP4F22Q6NT55 531 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 P2RX7Q99572 595 aaKnown RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 VPS33BQ9H267 617 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 ZNF215Q9UL58 517 aaPredicted RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 NFE2L3Q9Y4A8 694 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 LTBP4Q8N2S1 1624 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 CD19P15391 556 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 CASP1P29466 404 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 FAM26FQ5R3K3 315 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 LRSAM1Q6UWE0 723 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 ZNF830Q96NB3 372 aaPredicted RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 CRACR2AQ9BSW2 395 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 NOC4LQ9BVI4 516 aaKnown RBP10.26□□□□□ -0.77
VPS39-205ENST00000562258 PANK4Q9NVE7 773 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 GABBR1Q9UBS5 961 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 EXOC7Q9UPT5 735 aa10.26□□□□□ -0.77
VPS39-205ENST00000562258 KDM3AQ9Y4C1 1321 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 GJC1P36383 396 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 DMP1Q13316 513 aaPredicted RBP10.25□□□□□ -0.77
VPS39-205ENST00000562258 POTEDQ86YR6 584 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 LARP4BQ92615 738 aaKnown RBP10.25□□□□□ -0.77
VPS39-205ENST00000562258 IDI2Q9BXS1 227 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 EFCC1Q9HA90 598 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 DISC1Q9NRI5 854 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 ZBBXA8MT70 800 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 TMCO5BA8MYB1 307 aa10.25□□□□□ -0.77
VPS39-205ENST00000562258 PRPF4BQ13523 1007 aaKnown RBP10.25□□□□□ -0.77
VPS39-205ENST00000562258 RSPH3Q86UC2 560 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms