RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 RBM8AQ9Y5S9 174 aaKnown RBP11.98□□□□□ -0.49
CLK3-205ENST00000561673 ERICH2A1L162 156 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 OPLAHO14841 1288 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 ZBTB5O15062 677 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 NKRFO15226 690 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLK3-205ENST00000561673 TLR3O15455 904 aaKnown RBP11.97□□□□□ -0.49
CLK3-205ENST00000561673 TROAPQ12815 778 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 GRM4Q14833 912 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 SART3Q15020 963 aaKnown RBP11.97□□□□□ -0.49
CLK3-205ENST00000561673 PPP2R5BQ15173 497 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 TMEM67Q5HYA8 995 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 FAM109BQ6ICB4 259 aaPredicted RBP11.97□□□□□ -0.49
CLK3-205ENST00000561673 MFSD5Q6N075 450 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 MB21D2Q8IYB1 491 aaPredicted RBP11.97□□□□□ -0.49
CLK3-205ENST00000561673 OR6J1Q8NGC5 347 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 NSUN6Q8TEA1 469 aaKnown RBP11.97□□□□□ -0.49
CLK3-205ENST00000561673 COPS5Q92905 334 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 IWS1Q96ST2 819 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 RMDN3Q96TC7 470 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 AMNQ9BXJ7 453 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 LSG1Q9H089 658 aaKnown RBP11.97□□□□□ -0.49
CLK3-205ENST00000561673 TRPV6Q9H1D0 765 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 PCDHA1Q9Y5I3 950 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 LRRC37A2A6NM11 1700 aa11.97□□□□□ -0.49
CLK3-205ENST00000561673 CYTH3O43739 400 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 B4GALT4O60513 344 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 ARIH2O95376 493 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 CFBP00751 764 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 MYL3P08590 195 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 TXNP10599 105 aaKnown RBP11.96□□□□□ -0.49
CLK3-205ENST00000561673 CYP2C18P33260 490 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 CPT1AP50416 773 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 HSD17B4P51659 736 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 PURAQ00577 322 aaKnown RBP11.96□□□□□ -0.49
CLK3-205ENST00000561673 TTLL4Q14679 1199 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 STXBP2Q15833 593 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 ARHGEF16Q5VV41 709 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 CCDC62Q6P9F0 684 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 SEPT14Q6ZU15 432 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 C16orf59Q7L2K0 433 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 CENPQQ7L2Z9 268 aaPredicted RBP11.96□□□□□ -0.49
CLK3-205ENST00000561673 CATIPQ7Z7H3 387 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 RNPC3Q96LT9 517 aaKnown RBP11.96□□□□□ -0.49
CLK3-205ENST00000561673 ESYT1Q9BSJ8 1104 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 SEZ6LQ9BYH1 1024 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 PPP1R12CQ9BZL4 782 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 RIOX1Q9H6W3 641 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 GPHNQ9NQX3 736 aaPredicted RBP11.96□□□□□ -0.49
CLK3-205ENST00000561673 POLR3EQ9NVU0 708 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 UNC80Q8N2C7 3258 aa11.96□□□□□ -0.49
CLK3-205ENST00000561673 A6NJR5 290 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 CSF2RAP15509 400 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 EIF2AK2P19525 551 aaKnown RBP11.95□□□□□ -0.5
CLK3-205ENST00000561673 SMAD3P84022 425 aaKnown RBP11.95□□□□□ -0.5
CLK3-205ENST00000561673 PPIGQ13427 754 aaKnown RBP eCLIP11.95□□□□□ -0.51e-6■■□□□ 11.4
CLK3-205ENST00000561673 COL9A3Q14050 684 aaPredicted RBP11.95□□□□□ -0.5
CLK3-205ENST00000561673 LY6KQ17RY6 165 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 BRDTQ58F21 947 aaPredicted RBP11.95□□□□□ -0.5
CLK3-205ENST00000561673 HOMER1Q86YM7 354 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 TMEM199Q8N511 208 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 FAM161BQ96MY7 647 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 PIGSQ96S52 555 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 MTG1Q9BT17 334 aaPredicted RBP11.95□□□□□ -0.5
CLK3-205ENST00000561673 ALDH8A1Q9H2A2 487 aaPredicted RBP11.95□□□□□ -0.5
CLK3-205ENST00000561673 LY9Q9HBG7 655 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 PXMP2Q9NR77 195 aa11.95□□□□□ -0.5
CLK3-205ENST00000561673 UMODL1Q5DID0 1318 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 PNMA6FA0A0J9YX94 578 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 SLC27A2O14975 620 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 EIF3JO75822 258 aaKnown RBP11.94□□□□□ -0.5
CLK3-205ENST00000561673 NR3C2P08235 984 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 ACRP10323 421 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 HOXA13P31271 388 aaPredicted RBP11.94□□□□□ -0.5
CLK3-205ENST00000561673 GHRHRQ02643 423 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 NECTIN1Q15223 517 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 NBPF20Q3BBV1 942 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 BMP2KLQ5H9B9 411 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 TMEM240Q5SV17 173 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 CASC1Q6TDU7 716 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 GUCD1Q96NT3 240 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.94□□□□□ -0.5
CLK3-205ENST00000561673 HIPK3Q9H422 1215 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 TRMT13Q9NUP7 481 aaKnown RBP11.94□□□□□ -0.5
CLK3-205ENST00000561673 MAP3K20Q9NYL2 800 aaKnown RBP11.94□□□□□ -0.5
CLK3-205ENST00000561673 STXBP5LQ9Y2K9 1186 aa11.94□□□□□ -0.5
CLK3-205ENST00000561673 PRC1O43663 620 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 KPNA6O60684 536 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 MCM5P33992 734 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 ZNF697Q5TEC3 545 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 CREB3L3Q68CJ9 461 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 ZNF365Q70YC5 407 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 ZNF654Q8IZM8 581 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 SAMD3Q8N6K7 520 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 PPP1R13LQ8WUF5 828 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 AFG1LQ8WV93 481 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 PIBF1Q8WXW3 757 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 MAP3K14Q99558 947 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 PDCD2LQ9BRP1 358 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 MTA3Q9BTC8 594 aa11.93□□□□□ -0.5
CLK3-205ENST00000561673 MYL10Q9BUA6 226 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 132.4 ms