RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	KIAA0825	Q8IV33	1275 aa		5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	TTLL6	Q8N841	843 aa		5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	RNF34	Q969K3	372 aa		5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	FAM86C1	Q9NVL1	165 aa		5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	WHRN	Q9P202	907 aa		5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	GULP1	Q9UBP9	304 aa		5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	ZNF214	Q9UL59	606 aa	Predicted RBP	5.27	□□□□□ -1.57
SPG11-222	ENST00000560435	STXBP3	O00186	592 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	FZD7	O75084	574 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	GUCY2C	P25092	1073 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	PPP2R5D	Q14738	602 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	ZYX	Q15942	572 aa	Known RBP	5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	PRR31	Q5SQ13	230 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	ETV3L	Q6ZN32	361 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	UNC5A	Q6ZN44	842 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	USP51	Q70EK9	711 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	ZFPM1	Q8IX07	1006 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	TXNDC5	Q8NBS9	432 aa	Known RBP	5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	CDK5RAP1	Q96SZ6	601 aa	Known RBP	5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	SPON2	Q9BUD6	331 aa		5.26	□□□□□ -1.57
SPG11-222	ENST00000560435	TRBV23OR9-2	A0A075B6M9	112 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	LAMTOR5	O43504	91 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	SEPHS1	P49903	392 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	ICAM4	Q14773	271 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	MCTP2	Q6DN12	878 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	MIB1	Q86YT6	1006 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	DCP2	Q8IU60	420 aa	Known RBP	5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	RBBP8NL	Q8NC74	664 aa	Predicted RBP	5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	USP33	Q8TEY7	942 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	LCOR	Q96JN0	433 aa	Predicted RBP	5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	FERD3L	Q96RJ6	166 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	ZNF747	Q9BV97	191 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	SIT1	Q9Y3P8	196 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	BACE2	Q9Y5Z0	518 aa		5.25	□□□□□ -1.57
SPG11-222	ENST00000560435	C9orf118	A6NHY6	69 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	NPHS1	O60500	1241 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	NTRK1	P04629	796 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	PAM	P19021	973 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	ERCC3	P19447	782 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	ITGA1	P56199	1179 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	PLEKHH3	Q7Z736	793 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	CPNE8	Q86YQ8	564 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	HAUS7	Q99871	368 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	SYT3	Q9BQG1	590 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	KLC2	Q9H0B6	622 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	VPS11	Q9H270	941 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	CD248	Q9HCU0	757 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	PPP4R1L	Q9P1A2	415 aa		5.24	□□□□□ -1.57
SPG11-222	ENST00000560435	C2orf71	A6NGG8	1288 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	B4GALT3	O60512	393 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	MRPL58	Q14197	206 aa	Known RBP	5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	CRB2	Q5IJ48	1285 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	ZC3H18	Q86VM9	953 aa	Known RBP	5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	FAM26E	Q8N5C1	309 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	ADCY4	Q8NFM4	1077 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	KLHL25	Q9H0H3	589 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	AP5M1	Q9H0R1	490 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	GBP3	Q9H0R5	595 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	PCED1A	Q9H1Q7	454 aa		5.23	□□□□□ -1.57
SPG11-222	ENST00000560435	NPHP3-ACAD11	A0A0J9YXS1	232 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	C7orf72	A4D263	438 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	DDX3X	O00571	662 aa	Known RBP eCLIP	5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	VAMP4	O75379	141 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	FUCA1	P04066	466 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	AMPD2	Q01433	879 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	GRB10	Q13322	594 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	DPY19L1	Q2PZI1	675 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	CD300LD	Q6UXZ3	194 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	RUFY4	Q6ZNE9	571 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	DNER	Q8NFT8	737 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	PLEKHO2	Q8TD55	490 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	CGGBP1	Q9UFW8	167 aa	Predicted RBP	5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	LTBP3	Q9NS15	1303 aa		5.22	□□□□□ -1.57
SPG11-222	ENST00000560435	CIR1	Q86X95	450 aa	Predicted RBP	5.21	□□□□□ -1.58
SPG11-222	ENST00000560435	FAM126B	Q8IXS8	530 aa		5.21	□□□□□ -1.58
SPG11-222	ENST00000560435	SEC14L1	Q92503	715 aa		5.21	□□□□□ -1.58
SPG11-222	ENST00000560435	NPEPPSL1	A6NEC2	478 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	GPR42	O15529	346 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	SGSM2	O43147	1006 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	PPM1B	O75688	479 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	ZNF28	P17035	718 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	SELENOP	P49908	381 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	FBXW10	Q5XX13	1052 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	HEATR6	Q6AI08	1181 aa	Known RBP	5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	STK32C	Q86UX6	486 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	ARHGEF39	Q8N4T4	335 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	MBD6	Q96DN6	1003 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	NGRN	Q9NPE2	291 aa	Known RBP	5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	SLC12A7	Q9Y666	1083 aa		5.2	□□□□□ -1.58
SPG11-222	ENST00000560435	AMH	P03971	560 aa		5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	SLC6A11	P48066	632 aa		5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	EPHB4	P54760	987 aa		5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	ADAM9	Q13443	819 aa		5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	R3HDM1	Q15032	1099 aa	Known RBP	5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	GNPTAB	Q3T906	1256 aa		5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	PRAMEF18	Q5VWM3	479 aa		5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	PKN3	Q6P5Z2	889 aa		5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	RCC1L	Q96I51	464 aa	Known RBP	5.19	□□□□□ -1.58
SPG11-222	ENST00000560435	MARCH2	Q9P0N8	246 aa		5.19	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 20 ms