RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 WDR19Q8NEZ3 1342 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 RBM47A0AV96 593 aaKnown RBP13.64□□□□□ -0.23
USP3-214ENST00000559718 EDNRBP24530 442 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 DGKHQ86XP1 1220 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 IFNLR1Q8IU57 520 aaPredicted RBP13.64□□□□□ -0.23
USP3-214ENST00000559718 PNMA1Q8ND90 353 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 TBC1D5Q92609 795 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 COPS5Q92905 334 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 NOC4LQ9BVI4 516 aaKnown RBP13.64□□□□□ -0.23
USP3-214ENST00000559718 PBX4Q9BYU1 374 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 WNT8AQ9H1J5 351 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 ZNF576Q9H609 170 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 IL23AQ9NPF7 189 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 SCUBE2Q9NQ36 999 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 TRMT13Q9NUP7 481 aaKnown RBP13.64□□□□□ -0.23
USP3-214ENST00000559718 PCDHB8Q9UN66 801 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 PRUNE2Q8WUY3 3088 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 LAMA4Q16363 1823 aa13.64□□□□□ -0.23
USP3-214ENST00000559718 LOC102724159A0A0B4J2E5 919 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 MYL3P08590 195 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 CYP2C9P11712 490 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 PURAQ00577 322 aaKnown RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 PDE4DQ08499 809 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 PWP2Q15269 919 aaKnown RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 CDC37Q16543 378 aaPredicted RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 GPATCH4Q5T3I0 446 aaKnown RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 PSRC1Q6PGN9 363 aaPredicted RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 IQCA1Q86XH1 822 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 ENAHQ8N8S7 591 aaPredicted RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 OR6J1Q8NGC5 347 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 HERVK_113Q902F9 699 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 VWCEQ96DN2 955 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 ZSCAN10Q96SZ4 725 aaPredicted RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 ALDH8A1Q9H2A2 487 aaPredicted RBP13.63□□□□□ -0.23
USP3-214ENST00000559718 ZSWIM5Q9P217 1185 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 MYO9BQ13459 2157 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 CUL9Q8IWT3 2517 aa13.63□□□□□ -0.23
USP3-214ENST00000559718 ARIH2O95376 493 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 PPP2R5BQ15173 497 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 OTOP2Q7RTS6 562 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 ADGRF4Q8IZF3 695 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 USP38Q8NB14 1042 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 DNERQ8NFT8 737 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 ANKS1AQ92625 1134 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 SCLYQ96I15 445 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 DSCC1Q9BVC3 393 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 KAT14Q9H8E8 782 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 COL20A1Q9P218 1284 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 PNMA2Q9UL42 364 aa13.62□□□□□ -0.23
USP3-214ENST00000559718 HIP1O00291 1037 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 FGBP02675 491 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 CPT1AP50416 773 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 SCFD2Q8WU76 684 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 SPOCK2Q92563 424 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 TAAR1Q96RJ0 339 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 MTG1Q9BT17 334 aaPredicted RBP13.61□□□□□ -0.23
USP3-214ENST00000559718 VAT1LQ9HCJ6 419 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 POLR3EQ9NVU0 708 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 TNKSO95271 1327 aa13.61□□□□□ -0.23
USP3-214ENST00000559718 SCN10AQ9Y5Y9 1956 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 TXNP10599 105 aaKnown RBP13.6□□□□□ -0.23
USP3-214ENST00000559718 GSPT1P15170 499 aaKnown RBP13.6□□□□□ -0.23
USP3-214ENST00000559718 PDE4AP27815 886 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 IMMTQ16891 758 aaKnown RBP13.6□□□□□ -0.23
USP3-214ENST00000559718 QRICH1Q2TAL8 776 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 NBPF20Q3BBV1 942 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 CCDC178Q5BJE1 867 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 RGS22Q8NE09 1264 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 SYTL5Q8TDW5 730 aaPredicted RBP13.6□□□□□ -0.23
USP3-214ENST00000559718 SEZ6LQ9BYH1 1024 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 NKX2-4Q9H2Z4 354 aa13.6□□□□□ -0.23
USP3-214ENST00000559718 GPHNQ9NQX3 736 aaPredicted RBP13.6□□□□□ -0.23
USP3-214ENST00000559718 YBX2Q9Y2T7 364 aaKnown RBP13.6□□□□□ -0.23
USP3-214ENST00000559718 A6NJR5 290 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 NKRFO15226 690 aaKnown RBP eCLIP13.59□□□□□ -0.23
USP3-214ENST00000559718 DHX16O60231 1041 aaKnown RBP13.59□□□□□ -0.23
USP3-214ENST00000559718 PARP1P09874 1014 aaKnown RBP13.59□□□□□ -0.23
USP3-214ENST00000559718 RABGGTBP53611 331 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 ASPRV1Q53RT3 343 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 FAM47CQ5HY64 1035 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 CCDC62Q6P9F0 684 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 SEPT14Q6ZU15 432 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 STAG2Q8N3U4 1231 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 MPHOSPH6Q99547 160 aaKnown RBP13.59□□□□□ -0.23
USP3-214ENST00000559718 KRT23Q9C075 422 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 PRDM12Q9H4Q4 367 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 JMJD4Q9H9V9 463 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 PRDM6Q9NQX0 595 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 CTNNA3Q9UI47 895 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 SCN5AQ14524 2016 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 ABCB11O95342 1321 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 GBF1Q92538 1859 aa13.59□□□□□ -0.23
USP3-214ENST00000559718 VCANP13611 3396 aa13.58□□□□□ -0.23
USP3-214ENST00000559718 RBAK-RBAKDNI3L0D1 243 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 SUPT20HL2P0C7V6 817 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 MYOGP15173 224 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 NT5C2P49902 561 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 CHMP4BP1P59074 171 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 ADGRE1Q14246 886 aa13.58□□□□□ -0.24
USP3-214ENST00000559718 TTLL4Q14679 1199 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms