RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 ITGBL1O95965 494 aaPredicted RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 ALDH1A1P00352 501 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 MMP10P09238 476 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 HOXD8P13378 290 aaPredicted RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 FGFR2P21802 821 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 CHMLP26374 656 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 HYAL2Q12891 473 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 BRDTQ58F21 947 aaPredicted RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 STYK1Q6J9G0 422 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 SP8Q8IXZ3 490 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 LRRC47Q8N1G4 583 aaKnown RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 ZGPATQ8N5A5 531 aaKnown RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 KBTBD3Q8NAB2 608 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 OTUD7AQ8TE49 926 aaPredicted RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 RPS6KC1Q96S38 1066 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 TM9SF2Q99805 663 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 FSD1Q9BTV5 496 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 BHLHE41Q9C0J9 482 aaPredicted RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 EHMT1Q9H9B1 1298 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 BRD7Q9NPI1 651 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 SEC31BQ9NQW1 1179 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.05□□□□□ -1.44
LDLR-209ENST00000558528 HELLSQ9NRZ9 838 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 PAG1Q9NWQ8 432 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 KANSL3Q9P2N6 904 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 DENND2AQ9ULE3 1009 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 COMMD10Q9Y6G5 202 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 TIAM2Q8IVF5 1701 aa6.05□□□□□ -1.44
LDLR-209ENST00000558528 XDHP47989 1333 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 CASP8AP2Q9UKL3 1982 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 TLR3O15455 904 aaKnown RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 FRAT2O75474 233 aaPredicted RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 SRGNP10124 158 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 GRNP28799 593 aaKnown RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 HIBADHP31937 336 aaKnown RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 CDKN1CP49918 316 aaPredicted RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 WDR4P57081 412 aaKnown RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 MAP3K12Q12852 859 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 SEPT6Q14141 434 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 NCAPHQ15003 741 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 PPP2R5EQ16537 467 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 DEFB115Q30KQ5 88 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 PERM1Q5SV97 790 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 SPTY2D1Q68D10 685 aaPredicted RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 BNC2Q6ZN30 1099 aaPredicted RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 C15orf52Q6ZUT6 534 aaKnown RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 NLRP8Q86W28 1048 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 SKAP1Q86WV1 359 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 NCAPG2Q86XI2 1143 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 THNSL2Q86YJ6 484 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 FAM178BQ8IXR5 827 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 MEIOBQ8N635 442 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 VGLL2Q8N8G2 317 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 SUPT20HQ8NEM7 779 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 CELF1Q92879 486 aaKnown RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 EYA3Q99504 573 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 OSMRQ99650 979 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 KLF16Q9BXK1 252 aaPredicted RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 PRDM16Q9HAZ2 1276 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 TMEM39AQ9NV64 488 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 PFDN2Q9UHV9 154 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 GPN3Q9UHW5 284 aaPredicted RBP6.04□□□□□ -1.44
LDLR-209ENST00000558528 GGA1Q9UJY5 639 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 MAPRE3Q9UPY8 281 aa6.04□□□□□ -1.44
LDLR-209ENST00000558528 ARFGEF2Q9Y6D5 1785 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 ZNF804BA4D1E1 1349 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 PDS5AQ29RF7 1337 aaKnown RBP6.03□□□□□ -1.44
LDLR-209ENST00000558528 A0A1W2PNR3 127 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 RNF113AO15541 343 aaKnown RBP6.03□□□□□ -1.44
LDLR-209ENST00000558528 SGSM2O43147 1006 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 SPINT1O43278 529 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 ATE1O95260 518 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 PSAPP07602 524 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 MYCLP1P12525 358 aaPredicted RBP6.03□□□□□ -1.44
LDLR-209ENST00000558528 ZKSCAN1P17029 563 aaPredicted RBP6.03□□□□□ -1.44
LDLR-209ENST00000558528 PHKA2P46019 1235 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 MCM2P49736 904 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 DDR1Q08345 913 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 CCINQ13939 588 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 UBE3CQ15386 1083 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 NFE2Q16621 373 aaPredicted RBP6.03□□□□□ -1.44
LDLR-209ENST00000558528 LONRF3Q496Y0 759 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 MCMDC2Q4G0Z9 681 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 HGSNATQ68CP4 663 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 GK5Q6ZS86 529 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 TSHZ1Q6ZSZ6 1077 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 ZNF804AQ7Z570 1209 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 C2CD5Q86YS7 1000 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 TAB3Q8N5C8 712 aaPredicted RBP6.03□□□□□ -1.44
LDLR-209ENST00000558528 SLC17A8Q8NDX2 589 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 WDR66Q8TBY9 1149 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 TBC1D32Q96NH3 1257 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 ZKSCAN3Q9BRR0 538 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 VPS33BQ9H267 617 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 CRISPLD1Q9H336 500 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 POLMQ9NP87 494 aaPredicted RBP6.03□□□□□ -1.44
LDLR-209ENST00000558528 PIM2Q9P1W9 311 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 CTNNA3Q9UI47 895 aa6.03□□□□□ -1.44
LDLR-209ENST00000558528 KCNH4Q9UQ05 1017 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms