RNA–Protein interactions for RNA: ENST00000558324.1

HERC1-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 828 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-202ENST00000558324 CPT1AP50416 773 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 TROAPQ12815 778 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 ARHGEF16Q5VV41 709 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 CASC1Q6TDU7 716 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 SEPT14Q6ZU15 432 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 NSUN6Q8TEA1 469 aaKnown RBP13.85□□□□□ -0.19
HERC1-202ENST00000558324 PPP1R13LQ8WUF5 828 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 MTMR8Q96EF0 704 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 RNPC3Q96LT9 517 aaKnown RBP13.85□□□□□ -0.19
HERC1-202ENST00000558324 PCDHA1Q9Y5I3 950 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 GRIN2DO15399 1336 aa13.85□□□□□ -0.19
HERC1-202ENST00000558324 OPLAHO14841 1288 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 CYTH3O43739 400 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 HOXA13P31271 388 aaPredicted RBP13.84□□□□□ -0.19
HERC1-202ENST00000558324 CYP2C18P33260 490 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 CHMP4BP1P59074 171 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 COL9A3Q14050 684 aaPredicted RBP13.84□□□□□ -0.19
HERC1-202ENST00000558324 TTLL4Q14679 1199 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 BMP2KLQ5H9B9 411 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 GPR153Q6NV75 609 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 NFXL1Q6ZNB6 911 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 ZNF654Q8IZM8 581 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 IGDCC4Q8TDY8 1250 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 FAM161BQ96MY7 647 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 TRPV6Q9H1D0 765 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 LY9Q9HBG7 655 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 POLR3EQ9NVU0 708 aa13.84□□□□□ -0.19
HERC1-202ENST00000558324 NKRFO15226 690 aaKnown RBP eCLIP13.83□□□□□ -0.2
HERC1-202ENST00000558324 B4GALT4O60513 344 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 CD4P01730 458 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 CSF2RAP15509 400 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 HSD17B4P51659 736 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 PURAQ00577 322 aaKnown RBP13.83□□□□□ -0.2
HERC1-202ENST00000558324 STXBP2Q15833 593 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 BRDTQ58F21 947 aaPredicted RBP13.83□□□□□ -0.2
HERC1-202ENST00000558324 FAM47CQ5HY64 1035 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 CREB3L3Q68CJ9 461 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 MFSD5Q6N075 450 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 RAB11FIP4Q86YS3 637 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 SLC43A3Q8NBI5 491 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 CTCFLQ8NI51 663 aaPredicted RBP13.83□□□□□ -0.2
HERC1-202ENST00000558324 LRRC2Q9BYS8 371 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 RIOX1Q9H6W3 641 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 PXMP2Q9NR77 195 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 UMODL1Q5DID0 1318 aa13.83□□□□□ -0.2
HERC1-202ENST00000558324 MYH6P13533 1939 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 CCDC69A6NI79 296 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 ACRP10323 421 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 MYCLP12524 364 aaPredicted RBP13.82□□□□□ -0.2
HERC1-202ENST00000558324 RXRAP19793 462 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 MCM5P33992 734 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 LY6KQ17RY6 165 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 FCHSD1Q86WN1 690 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 TMEM199Q8N511 208 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 AFG1LQ8WV93 481 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 IWS1Q96ST2 819 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 MTG1Q9BT17 334 aaPredicted RBP13.82□□□□□ -0.2
HERC1-202ENST00000558324 MAF1Q9H063 256 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 HIPK3Q9H422 1215 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 MTMR10Q9NXD2 777 aa13.82□□□□□ -0.2
HERC1-202ENST00000558324 PNMA6FA0A0J9YX94 578 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 SH2B2O14492 632 aaPredicted RBP13.81□□□□□ -0.2
HERC1-202ENST00000558324 SORBS3O60504 671 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 DDAH1O94760 285 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 NR3C2P08235 984 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 CCL23P55773 120 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 PPIGQ13427 754 aaKnown RBP eCLIP13.81□□□□□ -0.2
HERC1-202ENST00000558324 NECTIN1Q15223 517 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 ZNF697Q5TEC3 545 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 CCDC62Q6P9F0 684 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 IL31RAQ8NI17 732 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 CCDC136Q96JN2 1154 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 ZFP91Q96JP5 570 aaPredicted RBP13.81□□□□□ -0.2
HERC1-202ENST00000558324 TMEM87BQ96K49 555 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.81□□□□□ -0.22e-8■■■■■ 40.2
HERC1-202ENST00000558324 ALDH8A1Q9H2A2 487 aaPredicted RBP13.81□□□□□ -0.2
HERC1-202ENST00000558324 TRMT13Q9NUP7 481 aaKnown RBP13.81□□□□□ -0.2
HERC1-202ENST00000558324 MRVI1Q9Y6F6 885 aa13.81□□□□□ -0.2
HERC1-202ENST00000558324 A6NJR5 290 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 GCOM1H8Y6P7 765 aaPredicted RBP13.8□□□□□ -0.2
HERC1-202ENST00000558324 CDC45O75419 566 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 EIF3JO75822 258 aaKnown RBP13.8□□□□□ -0.2
HERC1-202ENST00000558324 PLEKHA8P1O95397 391 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 GH1P01241 217 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 POLR2MP0CAP2 368 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 CYP2C9P11712 490 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 KIF5BP33176 963 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 ARHGAP1Q07960 439 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 TRAF1Q13077 416 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 NBPF20Q3BBV1 942 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 CMTR1Q8N1G2 835 aaKnown RBP13.8□□□□□ -0.2
HERC1-202ENST00000558324 PDCD2LQ9BRP1 358 aa13.8□□□□□ -0.2
HERC1-202ENST00000558324 NOC4LQ9BVI4 516 aaKnown RBP13.8□□□□□ -0.2
HERC1-202ENST00000558324 KPNA6O60684 536 aa13.79□□□□□ -0.2
HERC1-202ENST00000558324 MMP3P08254 477 aa13.79□□□□□ -0.2
HERC1-202ENST00000558324 SMAD3P84022 425 aaKnown RBP13.79□□□□□ -0.2
HERC1-202ENST00000558324 GHRHRQ02643 423 aa13.79□□□□□ -0.2
HERC1-202ENST00000558324 PGM5Q15124 567 aa13.79□□□□□ -0.2
HERC1-202ENST00000558324 TMEM240Q5SV17 173 aa13.79□□□□□ -0.2
HERC1-202ENST00000558324 RNF20Q5VTR2 975 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms