RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 CWF19L1Q69YN2 538 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 NXNQ6DKJ4 435 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 SLC4A10Q6U841 1118 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 SHISA2Q6UWI4 295 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 FKBP9P1Q75LS8 142 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 KIF18BQ86Y91 864 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 TCEAL8Q8IYN2 117 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 IFNL3Q8IZI9 196 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 MAGEB6Q8N7X4 407 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 DTWD2Q8NBA8 298 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 SMC1BQ8NDV3 1235 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 NPLOC4Q8TAT6 608 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 FRS2Q8WU20 508 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 COPS5Q92905 334 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 MPHOSPH6Q99547 160 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 PCGF6Q9BYE7 350 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 EMC7Q9NPA0 242 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 LUC7LQ9NQ29 371 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 THG1LQ9NWX6 298 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 IP6K2Q9UHH9 426 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 TMEFF2Q9UIK5 374 aaPredicted RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 JAG2Q9Y219 1238 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 LUC7L2Q9Y383 392 aaKnown RBP4.12□□□□□ -1.75
TRAV28-201ENST00000557548 ST14Q9Y5Y6 855 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 BACE2Q9Y5Z0 518 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 CNTNAP4Q9C0A0 1308 aa4.12□□□□□ -1.75
TRAV28-201ENST00000557548 SHISA3A0PJX4 238 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 GOLGA6CA6NDK9 693 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 GOLGA6BA6NDN3 693 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 C2orf71A6NGG8 1288 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 ARNTLO00327 626 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 TRAF5O00463 557 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 AURKAO14965 403 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 PSPNO60542 156 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CBX7O95931 251 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 EOMESO95936 686 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 MT-CO1P00395 513 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 GSNP06396 782 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CT47B1P0C2W7 299 aaPredicted RBP4.11□□□□□ -1.75
TRAV28-201ENST00000557548 GOLGA6DP0CG33 693 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 MYBL2P10244 700 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 LCP1P13796 627 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 GLB1P16278 677 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 ZSCAN20P17040 1043 aaPredicted RBP4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CYP7A1P22680 504 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 LSSP48449 732 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 TCIRG1Q13488 830 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 ADGRE1Q14246 886 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 SGO2Q562F6 1265 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 ACBD5Q5T8D3 534 aaPredicted RBP4.11□□□□□ -1.75
TRAV28-201ENST00000557548 KSR2Q6VAB6 950 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 HDGFL2Q7Z4V5 671 aaPredicted RBP4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CCDC103Q8IW40 242 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CBARPQ8N350 705 aaPredicted RBP4.11□□□□□ -1.75
TRAV28-201ENST00000557548 PUM2Q8TB72 1066 aaKnown RBP eCLIP4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CHTF18Q8WVB6 975 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 Q96M66 194 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 ZFYVE21Q9BQ24 234 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 YIPF2Q9BWQ6 316 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 AKTIPQ9H8T0 292 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 VTA1Q9NP79 307 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CABP5Q9NP86 173 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CHST12Q9NRB3 414 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 GPR27Q9NS67 375 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 SPTLC3Q9NUV7 552 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 GOLGA6AQ9NYA3 693 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 CLEC1BQ9P126 229 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 ZKSCAN5Q9Y2L8 839 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 SPEF1Q9Y4P9 236 aa4.11□□□□□ -1.75
TRAV28-201ENST00000557548 B8ZZF3 427 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 LEFTY1O75610 366 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 RFPL1O75677 317 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 CKMP06732 381 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 PLS3P13797 630 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 ATP2A2P16615 1042 aaKnown RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 RXRBP28702 533 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 LTBRP36941 435 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 SEPHS1P49903 392 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 ERVK-21P61565 698 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 PAK1Q13153 545 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 OS9Q13438 667 aaPredicted RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 HDAC1Q13547 482 aaPredicted RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 HLTFQ14527 1009 aaKnown RBP eCLIP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 GRIK4Q16099 956 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 GFOD2Q3B7J2 385 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 TMEM177Q53S58 311 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 RSPO2Q6UXX9 243 aaPredicted RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 LBX2Q6XYB7 198 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 SLC51AQ86UW1 340 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 C11orf74Q86VG3 221 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 TXNRD3Q86VQ6 643 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 TMEM130Q8N3G9 435 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 CISD2Q8N5K1 135 aaKnown RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 CHST14Q8NCH0 376 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 PCDH19Q8TAB3 1148 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 EZH1Q92800 747 aaPredicted RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 FCRL3Q96P31 734 aaPredicted RBP4.1□□□□□ -1.75
TRAV28-201ENST00000557548 CAMKK2Q96RR4 588 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 ALG1Q9BT22 464 aa4.1□□□□□ -1.75
TRAV28-201ENST00000557548 MENTQ9BUN1 341 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms