RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 AS3MTQ9HBK9 375 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 HACL1Q9UJ83 578 aa14.2□□□□□ -0.14
SHMT2-229ENST00000557348 PHF20L1A8MW92 1017 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 MEIS2O14770 477 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 RPN1P04843 607 aaKnown RBP14.19□□□□□ -0.14
SHMT2-229ENST00000557348 TNNT1P13805 278 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 BMP6P22004 513 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 SREBF1P36956 1147 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 TXKP42681 527 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 FAM83BQ5T0W9 1011 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 ZNF658Q5TYW1 1059 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-229ENST00000557348 ISM2Q6H9L7 571 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 MIGA2Q7L4E1 593 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 GRAMD1CQ8IYS0 662 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 SPC24Q8NBT2 197 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 KIF18AQ8NI77 898 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 ACER1Q8TDN7 264 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 ZNF830Q96NB3 372 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-229ENST00000557348 CTAGE1Q96RT6 745 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 PYCARDQ9ULZ3 195 aa14.19□□□□□ -0.14
SHMT2-229ENST00000557348 A0A087WWV3 80 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 TDP2O95551 362 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 SERPINC1P01008 464 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 CYP3A4P08684 503 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 TECP42680 631 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 FANCCQ00597 558 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 SPAG1Q07617 926 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 TERF2Q15554 542 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 Q4G0T1 1027 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 SPATA1Q5VX52 437 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 SPICE1Q8N0Z3 855 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 CCDC150Q8NCX0 1101 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 FAM20AQ96MK3 541 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 DEFB129Q9H1M3 183 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 PCDHA12Q9UN75 941 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 SYNRGQ9UMZ2 1314 aa14.18□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L15C9J2P7 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L13C9JLJ4 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L11C9JVI0 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L18D6R9N7 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L22D6RA61 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L17D6RBQ6 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L19D6RCP7 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L20D6RJB6 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 ATP8B1O43520 1251 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 SLC37A4O43826 429 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 PLCG1P19174 1290 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 LMOD1P29536 600 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-229ENST00000557348 CIITAP33076 1130 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 ARHGAP4P98171 946 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L24Q0WX57 530 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 NAALADL2Q58DX5 795 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USP17L6PQ6QN14 398 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 CRYGNQ8WXF5 182 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 C7orf25Q9BPX7 421 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 KCNMB3Q9NPA1 279 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 MAP3K20Q9NYL2 800 aaKnown RBP14.17□□□□□ -0.14
SHMT2-229ENST00000557348 GPRC5DQ9NZD1 345 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 NFE2L3Q9Y4A8 694 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 PITPNM2Q9BZ72 1349 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 GCOM1H8Y6P7 765 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-229ENST00000557348 RHOBTB3O94955 611 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 POLR2MP0CAP2 368 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 CDK11BP21127 795 aaKnown RBP14.17□□□□□ -0.14
SHMT2-229ENST00000557348 UBASH3AP57075 661 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 CUL4BQ13620 913 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 USH1GQ495M9 461 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 TBC1D10BQ4KMP7 808 aaPredicted RBP14.17□□□□□ -0.14
SHMT2-229ENST00000557348 HYIQ5T013 277 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 HAUS3Q68CZ6 603 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 CNNM4Q6P4Q7 775 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 SV2BQ7L1I2 683 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 CCDC186Q7Z3E2 898 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 PRPF38AQ8NAV1 312 aaKnown RBP14.17□□□□□ -0.14
SHMT2-229ENST00000557348 ANKRD20A12PQ8NF67 263 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 NLGN2Q8NFZ4 835 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 ERMNQ8TAM6 284 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 IFNKQ9P0W0 207 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 RWDD2AQ9UIY3 292 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 ZNF112Q9UJU3 913 aa14.17□□□□□ -0.14
SHMT2-229ENST00000557348 ZNF541Q9H0D2 1346 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 ZNF18P17022 549 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 PAK1Q13153 545 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 TPD52L1Q16890 204 aaPredicted RBP14.16□□□□□ -0.14
SHMT2-229ENST00000557348 COBLL1Q53SF7 1204 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 SAMD7Q7Z3H4 446 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 MCF2L2Q86YR7 1114 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 SCYL3Q8IZE3 742 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 SNX29Q8TEQ0 813 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 KIFC2Q96AC6 838 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 SLF1Q9BQI6 1058 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 WDR18Q9BV38 432 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 XPO4Q9C0E2 1151 aaKnown RBP14.16□□□□□ -0.14
SHMT2-229ENST00000557348 MAF1Q9H063 256 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 PICK1Q9NRD5 415 aa14.16□□□□□ -0.14
SHMT2-229ENST00000557348 PVALEFA0A1B0GWK0 134 aa14.15□□□□□ -0.14
SHMT2-229ENST00000557348 PP2D1A8MPX8 630 aa14.15□□□□□ -0.14
SHMT2-229ENST00000557348 CCP110O43303 1012 aa14.15□□□□□ -0.14
SHMT2-229ENST00000557348 ICAM1P05362 532 aa14.15□□□□□ -0.14
SHMT2-229ENST00000557348 CDC25AP30304 524 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms