RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 CUL5Q93034 780 aa12.32□□□□□ -0.44
LINC00239-201ENST00000556973 PSTPIP2Q9H939 334 aa12.32□□□□□ -0.44
LINC00239-201ENST00000556973 SPC25Q9HBM1 224 aa12.32□□□□□ -0.44
LINC00239-201ENST00000556973 PDGFCQ9NRA1 345 aa12.32□□□□□ -0.44
LINC00239-201ENST00000556973 RBM27Q9P2N5 1060 aaKnown RBP12.32□□□□□ -0.44
LINC00239-201ENST00000556973 DDX49Q9Y6V7 483 aaKnown RBP12.32□□□□□ -0.44
LINC00239-201ENST00000556973 KIAA1217Q5T5P2 1943 aa12.32□□□□□ -0.44
LINC00239-201ENST00000556973 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 hCG_1984214I3L0E3 225 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 ADCY6O43306 1168 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 PRPF3O43395 683 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 ADAMTS4O75173 837 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 EIF3JO75822 258 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 PGK1P00558 417 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 NR3C2P08235 984 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 EIF2AK2P19525 551 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 GJA9P57773 515 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 NKX3-2P78367 333 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 CCT2P78371 535 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 NOL8Q76FK4 1167 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 HEATR3Q7Z4Q2 680 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 FCHSD1Q86WN1 690 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 TEX2Q8IWB9 1127 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 ZNF713Q8N859 430 aaPredicted RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 KLHDC9Q8NEP7 349 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 SMARCC2Q8TAQ2 1214 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 PDCD2LQ9BRP1 358 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 TSEN34Q9BSV6 310 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 WDR11Q9BZH6 1224 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 SENP6Q9GZR1 1112 aaPredicted RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 AP5M1Q9H0R1 490 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 UPF3AQ9H1J1 476 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 GNEQ9Y223 722 aaKnown RBP12.31□□□□□ -0.44
LINC00239-201ENST00000556973 GTF3C3Q9Y5Q9 886 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 SYNRGQ9UMZ2 1314 aa12.31□□□□□ -0.44
LINC00239-201ENST00000556973 MEIS2O14770 477 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 NKRFO15226 690 aaKnown RBP eCLIP12.3□□□□□ -0.44
LINC00239-201ENST00000556973 DYNC1LI2O43237 492 aaPredicted RBP12.3□□□□□ -0.44
LINC00239-201ENST00000556973 IFNAR1P17181 557 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 SMPD1P17405 629 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 CST5P28325 142 aaPredicted RBP12.3□□□□□ -0.44
LINC00239-201ENST00000556973 AKAP17AQ02040 695 aaKnown RBP12.3□□□□□ -0.44
LINC00239-201ENST00000556973 PGM5Q15124 567 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 NTRK3Q16288 839 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 PFKFB3Q16875 520 aaPredicted RBP12.3□□□□□ -0.44
LINC00239-201ENST00000556973 DUSP28Q4G0W2 176 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 VSIG10LQ86VR7 867 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 PCSK9Q8NBP7 692 aaKnown RBP12.3□□□□□ -0.44
LINC00239-201ENST00000556973 SCFD2Q8WU76 684 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 LARP6Q9BRS8 491 aaKnown RBP12.3□□□□□ -0.44
LINC00239-201ENST00000556973 BARHL2Q9NY43 387 aa12.3□□□□□ -0.44
LINC00239-201ENST00000556973 TNRC18O15417 2968 aaPredicted RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 MOXD2PA6NHM9 499 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 EVI5O60447 810 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 STAM2O75886 525 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 C6orf222P0C671 652 aaPredicted RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 MYCLP12524 364 aaPredicted RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 SCG2P13521 617 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 CCND2P30279 289 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 NEK4P51957 841 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 NAPAP54920 295 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 TTLL4Q14679 1199 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 KCNA10Q16322 511 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 GNASQ5JWF2 1037 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 WWC2Q6AWC2 1192 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 CCSAPQ6IQ19 270 aaPredicted RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 PPP1R18Q6NYC8 613 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 CPLX2Q6PUV4 134 aaKnown RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 USP17L6PQ6QN14 398 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 SLC39A5Q6ZMH5 540 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 TLK2Q86UE8 772 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 GPKOWQ92917 476 aaPredicted RBP eCLIP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 LENG1Q96BZ8 264 aaPredicted RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 RNF26Q9BY78 433 aaPredicted RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 C22orf23Q9BZE7 217 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 GLT8D2Q9H1C3 349 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 SLKQ9H2G2 1235 aaPredicted RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 NCOA5Q9HCD5 579 aaKnown RBP12.29□□□□□ -0.44
LINC00239-201ENST00000556973 PHF24Q9UPV7 400 aa12.29□□□□□ -0.44
LINC00239-201ENST00000556973 SMCO2A6NFE2 343 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 STXBP3O00186 592 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 CPLX1O14810 134 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 ZEB2O60315 1214 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 TXNP10599 105 aaKnown RBP12.28□□□□□ -0.44
LINC00239-201ENST00000556973 RBM25P49756 843 aaKnown RBP12.28□□□□□ -0.44
LINC00239-201ENST00000556973 ACLYP53396 1101 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 AK2P54819 239 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 SSRP1Q08945 709 aaKnown RBP12.28□□□□□ -0.44
LINC00239-201ENST00000556973 STK3Q13188 491 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 PKN1Q16512 942 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 TMEM63BQ5T3F8 832 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 KCNV1Q6PIU1 500 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 SEPT14Q6ZU15 432 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 TRIM22Q8IYM9 498 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 CCDC12Q8WUD4 166 aaPredicted RBP12.28□□□□□ -0.44
LINC00239-201ENST00000556973 PHKBQ93100 1093 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 SLC26A6Q9BXS9 759 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 UPF2Q9HAU5 1272 aaKnown RBP12.28□□□□□ -0.44
LINC00239-201ENST00000556973 RIC8AQ9NPQ8 531 aa12.28□□□□□ -0.44
LINC00239-201ENST00000556973 TPCN1Q9ULQ1 816 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms