RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CTSWP56202 376 aa8.18□□□□□ -1.1
PRPF39-209ENST00000556353 FOXO4P98177 505 aa8.18□□□□□ -1.1
PRPF39-209ENST00000556353 MBLAC2Q68D91 279 aa8.18□□□□□ -1.1
PRPF39-209ENST00000556353 LINC01356Q8N9X3 169 aa8.18□□□□□ -1.1
PRPF39-209ENST00000556353 MARCH2Q9P0N8 246 aa8.18□□□□□ -1.1
PRPF39-209ENST00000556353 R3HCC1Q9Y3T6 440 aaKnown RBP8.18□□□□□ -1.1
PRPF39-209ENST00000556353 ZBTB7AO95365 584 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 ATF2P15336 505 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 HOXC12P31275 282 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 IQCEQ6IPM2 695 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 MCF2L2Q86YR7 1114 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 SP8Q8IXZ3 490 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 NPLOC4Q8TAT6 608 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 MICAL1Q8TDZ2 1067 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 FRS2Q8WU20 508 aa8.17□□□□□ -1.1
PRPF39-209ENST00000556353 TBX1O43435 398 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 NTRK1P04629 796 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 SNRPB2P08579 225 aaKnown RBP8.16□□□□□ -1.1
PRPF39-209ENST00000556353 PMLP29590 882 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 CAP1Q01518 475 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 INF2Q27J81 1249 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 E4F1Q66K89 784 aaPredicted RBP8.16□□□□□ -1.1
PRPF39-209ENST00000556353 MRM1Q6IN84 353 aaKnown RBP8.16□□□□□ -1.1
PRPF39-209ENST00000556353 DCP2Q8IU60 420 aaKnown RBP8.16□□□□□ -1.1
PRPF39-209ENST00000556353 PLEKHO2Q8TD55 490 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 DPF3Q92784 378 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 BCAS3Q9H6U6 928 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 BTG4Q9NY30 223 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 PMF1-BGLAPU3KQ54 211 aa8.16□□□□□ -1.1
PRPF39-209ENST00000556353 MC3RP41968 323 aa8.15□□□□□ -1.1
PRPF39-209ENST00000556353 ECI1P42126 302 aa8.15□□□□□ -1.1
PRPF39-209ENST00000556353 CYP4F3Q08477 520 aa8.15□□□□□ -1.1
PRPF39-209ENST00000556353 EEPD1Q7L9B9 569 aa8.15□□□□□ -1.1
PRPF39-209ENST00000556353 B3GNT8Q7Z7M8 397 aa8.15□□□□□ -1.1
PRPF39-209ENST00000556353 C20orf173Q96LM9 149 aa8.15□□□□□ -1.1
PRPF39-209ENST00000556353 CCDC140Q96MF4 163 aa8.15□□□□□ -1.1
PRPF39-209ENST00000556353 KRTAP9-7A8MTY7 169 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 MEFVO15553 781 aaPredicted RBP8.14□□□□□ -1.11
PRPF39-209ENST00000556353 GJB6O95452 261 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 CPP00450 1065 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 KCNJ6P48051 423 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 TEX2Q8IWB9 1127 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 SLC43A3Q8NBI5 491 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 FNIP1Q8TF40 1166 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 DIO2Q92813 273 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 KRTAP4-7Q9BYR0 210 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 AP5M1Q9H0R1 490 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 EPN3Q9H201 632 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 LUC7LQ9NQ29 371 aaKnown RBP8.14□□□□□ -1.11
PRPF39-209ENST00000556353 SIT1Q9Y3P8 196 aa8.14□□□□□ -1.11
PRPF39-209ENST00000556353 TIMM13Q9Y5L4 95 aaPredicted RBP8.14□□□□□ -1.11
PRPF39-209ENST00000556353 C22orf46C9J442 243 aa8.13□□□□□ -1.11
PRPF39-209ENST00000556353 AGRPO00253 132 aa8.13□□□□□ -1.11
PRPF39-209ENST00000556353 FFAR3O14843 346 aa8.13□□□□□ -1.11
PRPF39-209ENST00000556353 PLA2G1BP04054 148 aaKnown RBP8.13□□□□□ -1.11
PRPF39-209ENST00000556353 SCG5P05408 212 aa8.13□□□□□ -1.11
PRPF39-209ENST00000556353 RPL11P62913 178 aaKnown RBP8.13□□□□□ -1.11
PRPF39-209ENST00000556353 KCNAB2Q13303 367 aa8.13□□□□□ -1.11
PRPF39-209ENST00000556353 HNRNPLLQ8WVV9 542 aaKnown RBP8.13□□□□□ -1.11
PRPF39-209ENST00000556353 CPA5Q8WXQ8 436 aa8.13□□□□□ -1.11
PRPF39-209ENST00000556353 XYLT2Q9H1B5 865 aa8.13□□□□□ -1.11
PRPF39-209ENST00000556353 A0A0G2JLL6 359 aaPredicted RBP8.12□□□□□ -1.11
PRPF39-209ENST00000556353 MYO1BO43795 1136 aa8.12□□□□□ -1.11
PRPF39-209ENST00000556353 GTF2A2P52657 109 aa8.12□□□□□ -1.11
PRPF39-209ENST00000556353 CACNB2Q08289 660 aaPredicted RBP8.12□□□□□ -1.11
PRPF39-209ENST00000556353 ACBD5Q5T8D3 534 aaPredicted RBP8.12□□□□□ -1.11
PRPF39-209ENST00000556353 ANKS3Q6ZW76 656 aa8.12□□□□□ -1.11
PRPF39-209ENST00000556353 CCDC103Q8IW40 242 aa8.12□□□□□ -1.11
PRPF39-209ENST00000556353 TP53I13Q8NBR0 393 aaPredicted RBP8.12□□□□□ -1.11
PRPF39-209ENST00000556353 FEZF2Q8TBJ5 459 aa8.12□□□□□ -1.11
PRPF39-209ENST00000556353 GMLQ99445 158 aa8.12□□□□□ -1.11
PRPF39-209ENST00000556353 TMEFF2Q9UIK5 374 aaPredicted RBP8.12□□□□□ -1.11
PRPF39-209ENST00000556353 OTOL1A6NHN0 477 aaPredicted RBP8.11□□□□□ -1.11
PRPF39-209ENST00000556353 GFRA1P56159 465 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 SF1Q15637 639 aaKnown RBP8.11□□□□□ -1.11
PRPF39-209ENST00000556353 SLC10A6Q3KNW5 377 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 VWA3BQ502W6 1294 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 CEP68Q76N32 757 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 PPIL6Q8IXY8 311 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 SYT8Q8NBV8 401 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 KREMEN2Q8NCW0 462 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 SMARCC2Q8TAQ2 1214 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 RELTQ969Z4 430 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 ST7Q9NRC1 585 aa8.11□□□□□ -1.11
PRPF39-209ENST00000556353 B8ZZF3 427 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 FPR2P25090 351 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 HTRA3P83110 453 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 NFIXQ14938 502 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 PRSS53Q2L4Q9 553 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 MROH9Q5TGP6 573 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 SAPCD2Q86UD0 394 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 ZDHHC14Q8IZN3 488 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 SEC14L1Q92503 715 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 TRMT2BQ96GJ1 504 aaKnown RBP8.1□□□□□ -1.11
PRPF39-209ENST00000556353 RTEL1Q9NZ71 1219 aa8.1□□□□□ -1.11
PRPF39-209ENST00000556353 E9PSI1 815 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 ARNTLO00327 626 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 SGSM2O43147 1006 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 LTBRP36941 435 aa8.09□□□□□ -1.11
PRPF39-209ENST00000556353 BCL6P41182 706 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms