RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 GLYCTKQ8IVS8 523 aa7.79□□□□□ -1.16
LINC00643-203ENST00000555518 SYNE4Q8N205 404 aa7.79□□□□□ -1.16
LINC00643-203ENST00000555518 ZBTB38Q8NAP3 1195 aaPredicted RBP7.79□□□□□ -1.16
LINC00643-203ENST00000555518 PPP1R16BQ96T49 567 aa7.79□□□□□ -1.16
LINC00643-203ENST00000555518 TNKS2Q9H2K2 1166 aa7.79□□□□□ -1.16
LINC00643-203ENST00000555518 ANO2Q9NQ90 1003 aa7.79□□□□□ -1.16
LINC00643-203ENST00000555518 GTF2IRD1Q9UHL9 959 aa7.79□□□□□ -1.16
LINC00643-203ENST00000555518 NOP58Q9Y2X3 529 aaKnown RBP7.79□□□□□ -1.16
LINC00643-203ENST00000555518 PCDHGC5Q9Y5F6 944 aa7.79□□□□□ -1.16
LINC00643-203ENST00000555518 SALL3Q9BXA9 1300 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 LRRC10BA6NIK2 292 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 ZNF862O60290 1169 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 GADD45BO75293 160 aaPredicted RBP7.78□□□□□ -1.16
LINC00643-203ENST00000555518 BRD1O95696 1058 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 XRCC5P13010 732 aaKnown RBP7.78□□□□□ -1.16
LINC00643-203ENST00000555518 PARP10Q53GL7 1025 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 WDR89Q96FK6 387 aaPredicted RBP7.78□□□□□ -1.16
LINC00643-203ENST00000555518 TOX2Q96NM4 488 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 FAM129BQ96TA1 746 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 SSU72Q9NP77 194 aaKnown RBP7.78□□□□□ -1.16
LINC00643-203ENST00000555518 PA2G4Q9UQ80 394 aaKnown RBP7.78□□□□□ -1.16
LINC00643-203ENST00000555518 EXOC6BQ9Y2D4 811 aa7.78□□□□□ -1.16
LINC00643-203ENST00000555518 COL4A1P02462 1669 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 IGF2BP3O00425 579 aaKnown RBP eCLIP7.77□□□□□ -1.17
LINC00643-203ENST00000555518 SMARCA5O60264 1052 aaPredicted RBP7.77□□□□□ -1.17
LINC00643-203ENST00000555518 CSF1RP07333 972 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 RGS3P49796 1198 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 ERVK-24P63145 666 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 MESP2Q0VG99 397 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 ANKRD45Q5TZF3 282 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 TBC1D9BQ66K14 1250 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 LMBR1LQ6UX01 489 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 OTUD7AQ8TE49 926 aaPredicted RBP7.77□□□□□ -1.17
LINC00643-203ENST00000555518 CCDC74AQ96AQ1 378 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 FAM89AQ96GI7 184 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 LNPKQ9C0E8 428 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 COPRSQ9NQ92 184 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 TMEM39AQ9NV64 488 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 PODXL2Q9NZ53 605 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 HDAC5Q9UQL6 1122 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 NIP7Q9Y221 180 aaKnown RBP eCLIP7.77□□□□□ -1.17
LINC00643-203ENST00000555518 MYH3P11055 1940 aa7.77□□□□□ -1.17
LINC00643-203ENST00000555518 ABCC12Q96J65 1359 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 QSER1Q2KHR3 1735 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 IRS4O14654 1257 aaPredicted RBP7.76□□□□□ -1.17
LINC00643-203ENST00000555518 GYS1P13807 737 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 HCLS1P14317 486 aaPredicted RBP7.76□□□□□ -1.17
LINC00643-203ENST00000555518 ORC1Q13415 861 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 EZH2Q15910 746 aaKnown RBP7.76□□□□□ -1.17
LINC00643-203ENST00000555518 KCNMB1Q16558 191 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.76□□□□□ -1.17
LINC00643-203ENST00000555518 RNF214Q8ND24 703 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 KLHDC4Q8TBB5 520 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 UTP14AQ9BVJ6 771 aaKnown RBP7.76□□□□□ -1.17
LINC00643-203ENST00000555518 ZC3H12CQ9C0D7 883 aaKnown RBP7.76□□□□□ -1.17
LINC00643-203ENST00000555518 TRMT112Q9UI30 125 aaKnown RBP7.76□□□□□ -1.17
LINC00643-203ENST00000555518 ZNF652Q9Y2D9 606 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 CASZ1Q86V15 1759 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 PNPLA7Q6ZV29 1317 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 SH3TC1Q8TE82 1336 aa7.76□□□□□ -1.17
LINC00643-203ENST00000555518 H3BRB1 525 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 EIF1AYO14602 144 aaKnown RBP7.75□□□□□ -1.17
LINC00643-203ENST00000555518 RAB11FIP3O75154 756 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 LEFTY1O75610 366 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 SURF6O75683 361 aaKnown RBP7.75□□□□□ -1.17
LINC00643-203ENST00000555518 SASH1O94885 1247 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 CTSWP56202 376 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 NFIXQ14938 502 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 DTHD1Q6ZMT9 781 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 ATG9AQ7Z3C6 839 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 NPM2Q86SE8 214 aaKnown RBP7.75□□□□□ -1.17
LINC00643-203ENST00000555518 C16orf71Q8IYS4 520 aaPredicted RBP7.75□□□□□ -1.17
LINC00643-203ENST00000555518 TTLL11Q8NHH1 800 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 EMILIN2Q9BXX0 1053 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 TUT1Q9H6E5 874 aaKnown RBP7.75□□□□□ -1.17
LINC00643-203ENST00000555518 PLAGL2Q9UPG8 496 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 TNRC6CQ9HCJ0 1690 aaKnown RBP7.75□□□□□ -1.17
LINC00643-203ENST00000555518 RIC1Q4ADV7 1423 aa7.75□□□□□ -1.17
LINC00643-203ENST00000555518 RTL9Q8NET4 1388 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 PDE8AO60658 829 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 TM4SF1P30408 202 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 RFC4P35249 363 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 CD96P40200 585 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 AFMP43652 599 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 RAP1GAPP47736 663 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 FAAP100Q0VG06 881 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 SLC10A5Q5PT55 438 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 COL23A1Q86Y22 540 aaPredicted RBP7.74□□□□□ -1.17
LINC00643-203ENST00000555518 TOP6BLQ8N6T0 577 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 ZSCAN18Q8TBC5 510 aaPredicted RBP7.74□□□□□ -1.17
LINC00643-203ENST00000555518 KCNB2Q92953 911 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 ISL2Q96A47 359 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 LRRCC1Q9C099 1032 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 GPN3Q9UHW5 284 aaPredicted RBP7.74□□□□□ -1.17
LINC00643-203ENST00000555518 NRXN2Q9P2S2 1712 aa7.74□□□□□ -1.17
LINC00643-203ENST00000555518 TSPAN15O95858 294 aa7.73□□□□□ -1.17
LINC00643-203ENST00000555518 GSPT1P15170 499 aaKnown RBP7.73□□□□□ -1.17
LINC00643-203ENST00000555518 ITIH2P19823 946 aa7.73□□□□□ -1.17
LINC00643-203ENST00000555518 ZNF157P51786 506 aaPredicted RBP7.73□□□□□ -1.17
LINC00643-203ENST00000555518 CLCN7P51798 805 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms