RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 MYOZ2Q9NPC6 264 aa13.12□□□□□ -0.31
SHMT2-212ENST00000554467 LRWD1Q9UFC0 647 aa13.12□□□□□ -0.31
SHMT2-212ENST00000554467 DDX25Q9UHL0 483 aaKnown RBP13.12□□□□□ -0.31
SHMT2-212ENST00000554467 ZBTB21Q9ULJ3 1066 aa13.12□□□□□ -0.31
SHMT2-212ENST00000554467 TEX33O43247 280 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 NPM3O75607 178 aaKnown RBP13.11□□□□□ -0.31
SHMT2-212ENST00000554467 ZNF18P17022 549 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 CCT6AP40227 531 aaKnown RBP13.11□□□□□ -0.31
SHMT2-212ENST00000554467 TBC1D10BQ4KMP7 808 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-212ENST00000554467 NYAP1Q6ZVC0 841 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 KIFC2Q96AC6 838 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 FBXO28Q9NVF7 368 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 MYH7BA7E2Y1 1941 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 PRPHP41219 470 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 PRCPP42785 496 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 PRAMEF18Q5VWM3 479 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 SLC30A10Q6XR72 485 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 FAM177A1Q8N128 213 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-212ENST00000554467 MTMR9Q96QG7 549 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 hCG_1984214I3L0E3 225 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 LAD1O00515 517 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 SFPQP23246 707 aaKnown RBP eCLIP13.11□□□□□ -0.31
SHMT2-212ENST00000554467 PLA2G4AP47712 749 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 CLK2P49760 499 aaKnown RBP13.11□□□□□ -0.31
SHMT2-212ENST00000554467 FCHSD1Q86WN1 690 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 ZNF713Q8N859 430 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-212ENST00000554467 TBC1D5Q92609 795 aa13.11□□□□□ -0.31
SHMT2-212ENST00000554467 PRELPP51888 382 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 DYMQ7RTS9 669 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 FBXO11Q86XK2 927 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 NELFBQ8WX92 580 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 HAS1Q92839 578 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 CCSER1Q9C0I3 900 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 HERC5Q9UII4 1024 aaKnown RBP13.1□□□□□ -0.31
SHMT2-212ENST00000554467 PRR12Q9ULL5 1215 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 MEIS2O14770 477 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 PCNTO95613 3336 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 STAT3P40763 770 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 PMS1P54277 932 aaKnown RBP13.1□□□□□ -0.31
SHMT2-212ENST00000554467 UBXN2AP68543 259 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 ASIC1P78348 528 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 MCM6Q14566 821 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 RASA3Q14644 834 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 ECM1Q16610 540 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 KCNK18Q7Z418 384 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 NLGN2Q8NFZ4 835 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 ANO3Q9BYT9 981 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 LCMT1Q9UIC8 334 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 MYO1BO43795 1136 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 ERCC5P28715 1186 aaPredicted RBP13.1□□□□□ -0.31
SHMT2-212ENST00000554467 ADKP55263 362 aaKnown RBP13.1□□□□□ -0.31
SHMT2-212ENST00000554467 GRB10Q13322 594 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 SPATA1Q5VX52 437 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 VSTM4Q8IW00 320 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 IGSF22Q8N9C0 903 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 GMCL1P1Q8NEA9 526 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 NEK11Q8NG66 645 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 SNX29Q8TEQ0 813 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 AMNQ9BXJ7 453 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 TMX1Q9H3N1 280 aa13.1□□□□□ -0.31
SHMT2-212ENST00000554467 FCER1AP12319 257 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 H2AFXP16104 143 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-212ENST00000554467 NOP2P46087 812 aaKnown RBP13.09□□□□□ -0.31
SHMT2-212ENST00000554467 TGFB2P61812 414 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 AGBL3Q8NEM8 1001 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 CYP2W1Q8TAV3 490 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 CPLX3Q8WVH0 158 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 SECISBP2LQ93073 1101 aaKnown RBP13.09□□□□□ -0.31
SHMT2-212ENST00000554467 GMCL1Q96IK5 515 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 MTFR1LQ9H019 292 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 KBTBD4Q9NVX7 518 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 CBFA2T2O43439 604 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 KLRC4O43908 158 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 TEX2Q8IWB9 1127 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 CDK5RAP3Q96JB5 506 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 PNMA5Q96PV4 448 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 ARHGEF10LQ9HCE6 1279 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 SSBP05455 408 aaKnown RBP eCLIP13.09□□□□□ -0.31
SHMT2-212ENST00000554467 GMPSP49915 693 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-212ENST00000554467 PRR16Q569H4 304 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 ZNF658Q5TYW1 1059 aaPredicted RBP13.09□□□□□ -0.31
SHMT2-212ENST00000554467 PPP1R18Q6NYC8 613 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 CALML4Q96GE6 196 aa13.09□□□□□ -0.31
SHMT2-212ENST00000554467 OPLAHO14841 1288 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 TRIM66O15016 1216 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 STAT2P52630 851 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 GYS2P54840 703 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 PAK1Q13153 545 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 TMEM266Q2M3C6 531 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 GRIPAP1Q4V328 841 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 PYM1Q9BRP8 204 aaKnown RBP13.08□□□□□ -0.32
SHMT2-212ENST00000554467 VPS16Q9H269 839 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 CFBP00751 764 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 GSDMDP57764 484 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 FAM193AP78312 1265 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 STK4Q13043 487 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 ERCC6LQ2NKX8 1250 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 MICALL2Q8IY33 904 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 ERO1AQ96HE7 468 aa13.08□□□□□ -0.32
SHMT2-212ENST00000554467 AK8Q96MA6 479 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms