RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 ZMYND12Q9H0C1 365 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 VPS33BQ9H267 617 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 DHX36Q9H2U1 1008 aaKnown RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 RIOX1Q9H6W3 641 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 BARHL2Q9NY43 387 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 MTMR4Q9NYA4 1195 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 RGS17Q9UGC6 210 aaPredicted RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 PCDHA4Q9UN74 947 aa6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 TTF2Q9UNY4 1162 aaKnown RBP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.86□□□□□ -1.31
VIPAS39-204ENST00000553576 ESYT2A0FGR8 921 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 PHF20L1A8MW92 1017 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 KLRF2D3W0D1 207 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 STXBP3O00186 592 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 LAD1O00515 517 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 NEMFO60524 1076 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 PARP1P09874 1014 aaKnown RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SLFN14P0C7P3 912 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 VEGFAP15692 232 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 CTSOP43234 321 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 KIAA2012Q0VF49 1180 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 ORC2Q13416 577 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 GAS6Q14393 721 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 DHX8Q14562 1220 aaKnown RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 NCAPHQ15003 741 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 ZRSR1Q15695 479 aaKnown RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SLC35G1Q2M3R5 365 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 TTC38Q5R3I4 469 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 DACT2Q5SW24 774 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 PPP1R26Q5T8A7 1209 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 CDC42EP5Q6NZY7 148 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SH3BP5LQ7L8J4 393 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 MLKLQ8NB16 471 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SLC44A5Q8NCS7 719 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 CNNM3Q8NE01 707 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 CCDC12Q8WUD4 166 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 PIBF1Q8WXW3 757 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 ZNF622Q969S3 477 aaKnown RBP eCLIP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 MKL1Q969V6 931 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 CEP95Q96GE4 821 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 CCDC34Q96HJ3 373 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 TRIM5Q9C035 493 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 OSBPL5Q9H0X9 879 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 CSRNP2Q9H175 543 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 ENAMQ9NRM1 1142 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SPTLC3Q9NUV7 552 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 USP40Q9NVE5 1235 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 PGPEP1Q9NXJ5 209 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SAP30BPQ9UHR5 308 aaKnown RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SERPINB13Q9UIV8 391 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 SERPINA10Q9UK55 444 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 PCDHA5Q9Y5H7 936 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 MYH7BA7E2Y1 1941 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 ARFGEF1Q9Y6D6 1849 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 COL2A1P02458 1487 aaPredicted RBP6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 ADAMTSL1Q8N6G6 1762 aa6.85□□□□□ -1.31
VIPAS39-204ENST00000553576 hCG_1642624A0A1W2PR95 340 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 POLR2DO15514 142 aaKnown RBP6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 GNA11P29992 359 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 SHMT1P34896 483 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 LONP1P36776 959 aaKnown RBP6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 PRPHP41219 470 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 CRKP46108 304 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 GRIN1Q05586 938 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 MORC3Q14149 939 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 POSTNQ15063 836 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 DPCR1Q3MIW9 517 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 ASPRV1Q53RT3 343 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 Q8N3U1 123 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 GALNT6Q8NCL4 622 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 ARMC2Q8NEN0 867 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 KIAA1524Q8TCG1 905 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 MTMR8Q96EF0 704 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 DDX4Q9NQI0 724 aaKnown RBP6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 STK32BQ9NY57 414 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 IMPACTQ9P2X3 320 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 SERTAD1Q9UHV2 236 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 PCDHA6Q9UN73 950 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 STX8Q9UNK0 236 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 PCDHA8Q9Y5H6 950 aa6.84□□□□□ -1.31
VIPAS39-204ENST00000553576 ECE2O60344 883 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 ENTPD3O75355 529 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 TTLL1O95922 423 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 HLA-DOAP06340 250 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 PDHBP11177 359 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 TPM4P67936 248 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 PNOCQ13519 176 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 NOLC1Q14978 699 aaKnown RBP eCLIP6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 ZNF174Q15697 407 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 EZH2Q15910 746 aaKnown RBP6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 GPATCH4Q5T3I0 446 aaKnown RBP6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 WWC2Q6AWC2 1192 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 TATDN1Q6P1N9 297 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 POTEAQ6S8J7 498 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 OLFM4Q6UX06 510 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 PIK3AP1Q6ZUJ8 805 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 KRT25Q7Z3Z0 450 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 RTKN2Q8IZC4 609 aa6.83□□□□□ -1.32
VIPAS39-204ENST00000553576 AOPEPQ8N6M6 819 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms