RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 C17orf80Q9BSJ5 609 aa15.35■□□□□ 0.05
VPS29-211ENST00000553128 NOD1Q9Y239 953 aa15.35■□□□□ 0.05
VPS29-211ENST00000553128 POTEB3A0JP26 581 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 GPAA1O43292 621 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 DCXO43602 365 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 SMARCA5O60264 1052 aaPredicted RBP15.34■□□□□ 0.05
VPS29-211ENST00000553128 NMT2O60551 498 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 PLA2G6O60733 806 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 RAB11FIP3O75154 756 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 PTGISQ16647 500 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 RCSD1Q6JBY9 416 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 GDF6Q6KF10 455 aaPredicted RBP15.34■□□□□ 0.05
VPS29-211ENST00000553128 POTEBQ6S5H4 581 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 NEK9Q8TD19 979 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 MTMR7Q9Y216 660 aa15.34■□□□□ 0.05
VPS29-211ENST00000553128 TRIP12Q14669 1992 aaPredicted RBP15.34■□□□□ 0.05
VPS29-211ENST00000553128 PTPDC1A2A3K4 754 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 ARIH2O95376 493 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 CXCL10P02778 98 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 APPP05067 770 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 ICAM1P05362 532 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 SLC16A2P36021 539 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 PTPN11Q06124 597 aaPredicted RBP15.33■□□□□ 0.04
VPS29-211ENST00000553128 PPP2R5BQ15173 497 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 LRRFIP1Q32MZ4 808 aaKnown RBP15.33■□□□□ 0.04
VPS29-211ENST00000553128 TTBK2Q6IQ55 1244 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 CNKSR3Q6P9H4 555 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 HFE2Q6ZVN8 426 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 IFNL3Q8IZI9 196 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 AFAP1L1Q8TED9 768 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 APPBP2Q92624 585 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 INCENPQ9NQS7 918 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 IL17RBQ9NRM6 502 aa15.33■□□□□ 0.04
VPS29-211ENST00000553128 ADD3Q9UEY8 706 aaKnown RBP15.33■□□□□ 0.04
VPS29-211ENST00000553128 SIP14410 1827 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 CFAP54Q96N23 3096 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 SELPP16109 830 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 CALML3P27482 149 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 TSHZ3Q63HK5 1081 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 LRRC8DQ7L1W4 858 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 CAGE1Q8TC20 777 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 KAT2BQ92831 832 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 RANBP17Q9H2T7 1088 aaKnown RBP15.32■□□□□ 0.04
VPS29-211ENST00000553128 ZNF287Q9HBT7 754 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 STX8Q9UNK0 236 aa15.32■□□□□ 0.04
VPS29-211ENST00000553128 RNF113AO15541 343 aaKnown RBP15.31■□□□□ 0.04
VPS29-211ENST00000553128 KPNA6O60684 536 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 CKBP12277 381 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 EDNRBP24530 442 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 ZP2Q05996 745 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 BRDTQ58F21 947 aaPredicted RBP15.31■□□□□ 0.04
VPS29-211ENST00000553128 TRAF7Q6Q0C0 670 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.31■□□□□ 0.041e-9■□□□□ 9.6
VPS29-211ENST00000553128 KBTBD3Q8NAB2 608 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 FBXO22Q8NEZ5 403 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 CLEC4DQ8WXI8 215 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 WNT8BQ93098 351 aa15.31■□□□□ 0.04
VPS29-211ENST00000553128 SEC62Q99442 399 aaKnown RBP15.31■□□□□ 0.04
VPS29-211ENST00000553128 ABHD14A-ACY1A0A1B0GW23 586 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 PATL2C9JE40 543 aaKnown RBP15.3■□□□□ 0.04
VPS29-211ENST00000553128 NKRFO15226 690 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS29-211ENST00000553128 HMMRO75330 724 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 TXNP10599 105 aaKnown RBP15.3■□□□□ 0.04
VPS29-211ENST00000553128 PDE4BQ07343 736 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 PDE4DQ08499 809 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 MBTPS1Q14703 1052 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 CCDC155Q8N6L0 562 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 SCFD2Q8WU76 684 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 AFG1LQ8WV93 481 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 RAD50Q92878 1312 aa15.3■□□□□ 0.04
VPS29-211ENST00000553128 C19orf67A6NJJ6 358 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 MMP3P08254 477 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 GNAT2P19087 354 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 PPARAQ07869 468 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 RBL2Q08999 1139 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 CCDC96Q2M329 555 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 SESTD1Q86VW0 696 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 MRPL38Q96DV4 380 aaKnown RBP15.29■□□□□ 0.04
VPS29-211ENST00000553128 CRBNQ96SW2 442 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 KCNH6Q9H252 994 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 ZBTB40Q9NUA8 1239 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 ZNF318Q5VUA4 2279 aa15.29■□□□□ 0.04
VPS29-211ENST00000553128 MYO15AQ9UKN7 3530 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 FRMPD2Q68DX3 1309 aaPredicted RBP15.28■□□□□ 0.04
VPS29-211ENST00000553128 LOC102724159A0A0B4J2E5 919 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 IRS1P35568 1242 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 RPS6P62753 249 aaKnown RBP15.28■□□□□ 0.04
VPS29-211ENST00000553128 CTDSPL2Q05D32 466 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 MKRN4PQ13434 485 aaPredicted RBP15.28■□□□□ 0.04
VPS29-211ENST00000553128 PWP2Q15269 919 aaKnown RBP15.28■□□□□ 0.04
VPS29-211ENST00000553128 LY6KQ17RY6 165 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 TRIM71Q2Q1W2 868 aaKnown RBP15.28■□□□□ 0.04
VPS29-211ENST00000553128 PUS10Q3MIT2 529 aaKnown RBP15.28■□□□□ 0.04
VPS29-211ENST00000553128 TCEAL5Q5H9L2 206 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 SYDE2Q5VT97 1194 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 CCDC62Q6P9F0 684 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 RNF207Q6ZRF8 634 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 EP400NLQ6ZTU2 488 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 ECHDC1Q9NTX5 307 aa15.28■□□□□ 0.04
VPS29-211ENST00000553128 HDAC6Q9UBN7 1215 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms