RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 CD4P01730 458 aa21.66■■□□□ 1.06
CHMP1A-207ENST00000549328 HSD17B4P51659 736 aa21.66■■□□□ 1.06
CHMP1A-207ENST00000549328 FPGSQ05932 587 aa21.66■■□□□ 1.06
CHMP1A-207ENST00000549328 TTLL4Q14679 1199 aa21.66■■□□□ 1.06
CHMP1A-207ENST00000549328 STXBP2Q15833 593 aa21.66■■□□□ 1.06
CHMP1A-207ENST00000549328 BRDTQ58F21 947 aaPredicted RBP21.66■■□□□ 1.06
CHMP1A-207ENST00000549328 C9orf50Q5SZB4 431 aa21.66■■□□□ 1.06
CHMP1A-207ENST00000549328 GRIN2DO15399 1336 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 OPLAHO14841 1288 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 SLC27A2O14975 620 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 CFBP00751 764 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 TXNP10599 105 aaKnown RBP21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 MCM5P33992 734 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 SLC35G1Q2M3R5 365 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 MFSD5Q6N075 450 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 CASC1Q6TDU7 716 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 OR6J1Q8NGC5 347 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 TMEM87BQ96K49 555 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 LY9Q9HBG7 655 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 ANO2Q9NQ90 1003 aa21.65■■□□□ 1.06
CHMP1A-207ENST00000549328 PNMA6FA0A0J9YX94 578 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 A6NJR5 290 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 PRC1O43663 620 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 CYTH3O43739 400 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 KPNA6O60684 536 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 ARHGEF16Q5VV41 709 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 CREB3L3Q68CJ9 461 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 FAM109BQ6ICB4 259 aaPredicted RBP21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 CCDC62Q6P9F0 684 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 HOMER1Q86YM7 354 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 DEFB123Q8N688 67 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 PIGSQ96S52 555 aa21.64■■□□□ 1.05
CHMP1A-207ENST00000549328 EIF3JO75822 258 aaKnown RBP21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 DDAH1O94760 285 aa21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 SMARCA1P28370 1054 aa21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 EPHB4P54760 987 aa21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 PURAQ00577 322 aaKnown RBP21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 ZNF654Q8IZM8 581 aa21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 GPHNQ9NQX3 736 aaPredicted RBP21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 PXMP2Q9NR77 195 aa21.63■■□□□ 1.05
CHMP1A-207ENST00000549328 NR3C2P08235 984 aa21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 KIF5BP33176 963 aa21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 LIFRP42702 1097 aa21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 RNF20Q5VTR2 975 aa21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 SKAP1Q86WV1 359 aa21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 CTCFLQ8NI51 663 aaPredicted RBP21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 MTG1Q9BT17 334 aaPredicted RBP21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 BAZ2BQ9UIF8 2168 aaKnown RBP21.62■■□□□ 1.05
CHMP1A-207ENST00000549328 ARIH2O95376 493 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 EIF2AK2P19525 551 aaKnown RBP21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 PSMC6P62333 389 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 PPIGQ13427 754 aaKnown RBP eCLIP21.61■■□□□ 1.057e-7■■■□□ 15.5
CHMP1A-207ENST00000549328 SEPT14Q6ZU15 432 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 TMEM199Q8N511 208 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 COPS5Q92905 334 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 LZTS2Q9BRK4 669 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 SPZ1Q9BXG8 430 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 MTMR10Q9NXD2 777 aa21.61■■□□□ 1.05
CHMP1A-207ENST00000549328 GCOM1H8Y6P7 765 aaPredicted RBP21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 SH2B2O14492 632 aaPredicted RBP21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 MYL3P08590 195 aa21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 POLR2MP0CAP2 368 aa21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 GNAQP50148 359 aa21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 SMAD3P84022 425 aaKnown RBP21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 PDCD2LQ9BRP1 358 aa21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 ALDH8A1Q9H2A2 487 aaPredicted RBP21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 LAMA2P24043 3122 aaKnown RBP21.6■■□□□ 1.05
CHMP1A-207ENST00000549328 CCDC69A6NI79 296 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 B4GALT4O60513 344 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 CDC45O75419 566 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 GH1P01241 217 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 SUPT20HL2P0C7V6 817 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 CALM1P0DP23 149 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 CALM2P0DP24 149 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 CALM3P0DP25 149 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 NFXL1Q6ZNB6 911 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 Q7L0L9 218 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 CCDC136Q96JN2 1154 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 RNPC3Q96LT9 517 aaKnown RBP21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 PPP1R12CQ9BZL4 782 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 TRPV6Q9H1D0 765 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 HIPK3Q9H422 1215 aa21.59■■□□□ 1.05
CHMP1A-207ENST00000549328 HOXA13P31271 388 aaPredicted RBP21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 LY6KQ17RY6 165 aa21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 TSGA10IPQ3SY00 556 aa21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 KCNV1Q6PIU1 500 aa21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 VSIG10LQ86VR7 867 aa21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 RRP36Q96EU6 259 aaKnown RBP21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 MYL10Q9BUA6 226 aa21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 DDX41Q9UJV9 622 aaKnown RBP21.58■■□□□ 1.05
CHMP1A-207ENST00000549328 KIAA1217Q5T5P2 1943 aa21.58■■□□□ 1.04
CHMP1A-207ENST00000549328 CSF2RAP15509 400 aa21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 CYP2C18P33260 490 aa21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 PTPN11Q06124 597 aaPredicted RBP21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 ARHGAP1Q07960 439 aa21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 COL9A3Q14050 684 aaPredicted RBP21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 NBPF20Q3BBV1 942 aa21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 NFRKBQ6P4R8 1299 aa21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 C16orf59Q7L2K0 433 aa21.57■■□□□ 1.04
CHMP1A-207ENST00000549328 SGMS1Q86VZ5 419 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms