RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ERICH2A1L162 156 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 GOLGA8BA8MQT2 603 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 ZBTB43O43298 467 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 HLA-DOAP06340 250 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 YBX3P16989 372 aaKnown RBP eCLIP9.79□□□□□ -0.841e-6■■□□□ 11.7
VPS29-203ENST00000546588 IFNAR1P17181 557 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 SYT1P21579 422 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 CTSOP43234 321 aaPredicted RBP9.79□□□□□ -0.84
VPS29-203ENST00000546588 METAP2P50579 478 aaKnown RBP eCLIP9.79□□□□□ -0.84
VPS29-203ENST00000546588 EIF6P56537 245 aaKnown RBP9.79□□□□□ -0.84
VPS29-203ENST00000546588 DLGAP5Q15398 846 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 EAPPQ56P03 285 aaPredicted RBP9.79□□□□□ -0.84
VPS29-203ENST00000546588 CYP2U1Q7Z449 544 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 ZNF654Q8IZM8 581 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 FAM177A1Q8N128 213 aaPredicted RBP9.79□□□□□ -0.84
VPS29-203ENST00000546588 NECAB1Q8N987 351 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 WHAMMQ8TF30 809 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 SAP130Q9H0E3 1048 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 ZNF70Q9UC06 446 aaPredicted RBP9.79□□□□□ -0.84
VPS29-203ENST00000546588 PPP1R1BQ9UD71 204 aaPredicted RBP9.79□□□□□ -0.84
VPS29-203ENST00000546588 SMC3Q9UQE7 1217 aa9.79□□□□□ -0.84
VPS29-203ENST00000546588 WDR33Q9C0J8 1336 aaKnown RBP9.79□□□□□ -0.84
VPS29-203ENST00000546588 RLFQ13129 1914 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 CCDC196A0A1B0GTZ2 297 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 PTPDC1A2A3K4 754 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 DDTLA6NHG4 134 aaPredicted RBP9.78□□□□□ -0.84
VPS29-203ENST00000546588 TSPY2A6NKD2 308 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 STX6O43752 255 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 CDKL5O76039 1030 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 SNHG28P0DPA3 235 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 FDPSP14324 419 aaKnown RBP9.78□□□□□ -0.84
VPS29-203ENST00000546588 SMARCA1P28370 1054 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 PKP1Q13835 747 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 IFIT1BQ5T764 474 aaKnown RBP9.78□□□□□ -0.84
VPS29-203ENST00000546588 C16orf46Q6P387 395 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 NBPF11Q86T75 865 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 TNPO1Q92973 898 aaKnown RBP9.78□□□□□ -0.84
VPS29-203ENST00000546588 MKL1Q969V6 931 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 DYNLL2Q96FJ2 89 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 TDRD3Q9H7E2 651 aaKnown RBP9.78□□□□□ -0.84
VPS29-203ENST00000546588 PRDM10Q9NQV6 1147 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS29-203ENST00000546588 IGSF5Q9NSI5 407 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 GINM1Q9NU53 330 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 RBM28Q9NW13 759 aaKnown RBP9.78□□□□□ -0.84
VPS29-203ENST00000546588 GPRC5DQ9NZD1 345 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 TMOD2Q9NZR1 351 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 MTMR6Q9Y217 621 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 KIF3AQ9Y496 699 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 PPP2R3BQ9Y5P8 575 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 SLC12A7Q9Y666 1083 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 A0A0G2JMZ2 1700 aa9.78□□□□□ -0.84
VPS29-203ENST00000546588 A0A1W2PRU2 124 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 CCDC69A6NI79 296 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 NDUFB5O43674 189 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 MYO1BO43795 1136 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 RANBP6O60518 1105 aaKnown RBP9.77□□□□□ -0.85
VPS29-203ENST00000546588 PRDM1O75626 825 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 TCF3P15923 654 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 CDC27P30260 824 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 GMPSP49915 693 aaPredicted RBP9.77□□□□□ -0.85
VPS29-203ENST00000546588 TFAP4Q01664 338 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 PICALMQ13492 652 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 TNFAIP1Q13829 316 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 NOL8Q76FK4 1167 aaKnown RBP9.77□□□□□ -0.85
VPS29-203ENST00000546588 SLC9A9Q8IVB4 645 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 ZFPM1Q8IX07 1006 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 RGL4Q8IZJ4 473 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 FANCBQ8NB91 859 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 SLC44A5Q8NCS7 719 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 AGBL1Q96MI9 1066 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 TEPSINQ96N21 525 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 RNF26Q9BY78 433 aaPredicted RBP9.77□□□□□ -0.85
VPS29-203ENST00000546588 MTMR4Q9NYA4 1195 aa9.77□□□□□ -0.85
VPS29-203ENST00000546588 SAP30BPQ9UHR5 308 aaKnown RBP9.77□□□□□ -0.85
VPS29-203ENST00000546588 SSC5DA1L4H1 1573 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 GOLGA8AA7E2F4 631 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 JAK2O60674 1132 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 TSPY3P0CV98 308 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 TSPY8P0CW00 308 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 ZSCAN22P10073 491 aaPredicted RBP9.76□□□□□ -0.85
VPS29-203ENST00000546588 EPHA4P54764 986 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 GRM4Q14833 912 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 RTN1Q16799 776 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 RRP12Q5JTH9 1297 aaKnown RBP9.76□□□□□ -0.85
VPS29-203ENST00000546588 TMTC3Q6ZXV5 915 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 ZNF444Q8N0Y2 327 aaPredicted RBP9.76□□□□□ -0.85
VPS29-203ENST00000546588 VWA5B2Q8N398 1253 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 TMEM87AQ8NBN3 555 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 RNF217Q8TC41 542 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 ZNF526Q8TF50 670 aaPredicted RBP9.76□□□□□ -0.85
VPS29-203ENST00000546588 MKNK2Q9HBH9 465 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 NCOA5Q9HCD5 579 aaKnown RBP9.76□□□□□ -0.85
VPS29-203ENST00000546588 ARHGEF10LQ9HCE6 1279 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 NYAP2Q9P242 653 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 CNTNAP5Q8WYK1 1306 aa9.76□□□□□ -0.85
VPS29-203ENST00000546588 TRPM7Q96QT4 1865 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 NMT2O60551 498 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 F13A1P00488 732 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 EGFRP00533 1210 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms