RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 MRIQ9BWK5 157 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 PSTPIP2Q9H939 334 aa20.14■□□□□ 0.81
VIM-209ENST00000544301 DDX25Q9UHL0 483 aaKnown RBP20.14■□□□□ 0.81
VIM-209ENST00000544301 ZSCAN20P17040 1043 aaPredicted RBP20.13■□□□□ 0.81
VIM-209ENST00000544301 CENPPQ6IPU0 288 aa20.13■□□□□ 0.81
VIM-209ENST00000544301 KIAA0825Q8IV33 1275 aa20.13■□□□□ 0.81
VIM-209ENST00000544301 HAS1Q92839 578 aa20.13■□□□□ 0.81
VIM-209ENST00000544301 EPN1Q9Y6I3 576 aaPredicted RBP20.13■□□□□ 0.81
VIM-209ENST00000544301 SIPA1L1O43166 1804 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 RASSF10A6NK89 507 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 PLSCR1O15162 318 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 NDUFA10O95299 355 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 MTIF2P46199 727 aaKnown RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 TBC1D8BQ0IIM8 1120 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 TCP10Q12799 353 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 SLC35F6Q8N357 371 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 TTYH3Q9C0H2 523 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 DHX36Q9H2U1 1008 aaKnown RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 ARGLU1Q9NWB6 273 aaPredicted RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 ATF5Q9Y2D1 282 aaPredicted RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 DDTLA6NHG4 134 aaPredicted RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 FAM196BA6NMK8 535 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 SHROOM1Q2M3G4 852 aaPredicted RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 MIIPQ5JXC2 388 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 WDR59Q6PJI9 974 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 DYMQ7RTS9 669 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 KCNK18Q7Z418 384 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 KRT222Q8N1A0 295 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 GPR161Q8N6U8 529 aaKnown RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 MKL1Q969V6 931 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 FAM198AQ9UFP1 575 aa20.12■□□□□ 0.81
VIM-209ENST00000544301 REXO2Q9Y3B8 237 aaKnown RBP20.12■□□□□ 0.81
VIM-209ENST00000544301 EEF2P13639 858 aaKnown RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 FKBP1AP62942 108 aaKnown RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 DACT2Q5SW24 774 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 TEX35Q5T0J7 233 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 STRIP1Q5VSL9 837 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 ZSCAN29Q8IWY8 852 aaPredicted RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 FLAD1Q8NFF5 587 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 NOC4LQ9BVI4 516 aaKnown RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 NUP58Q9BVL2 599 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 EPC1Q9H2F5 836 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 CDC23Q9UJX2 597 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 MYH7BA7E2Y1 1941 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 CTAGE9A4FU28 777 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 GCFC2P16383 781 aaKnown RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 KLK7P49862 253 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 BMS1Q14692 1282 aaKnown RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 ECM1Q16610 540 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 TSR1Q2NL82 804 aaKnown RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 QRICH1Q2TAL8 776 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 CERKLQ49MI3 558 aaPredicted RBP20.11■□□□□ 0.81
VIM-209ENST00000544301 MSL1Q68DK7 614 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 SH3BP5LQ7L8J4 393 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 RETREG2Q8NC44 543 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 DCAF4Q8WV16 495 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 IDI2Q9BXS1 227 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 NYAP2Q9P242 653 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 MYO1AQ9UBC5 1043 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 PI4KBQ9UBF8 816 aa20.11■□□□□ 0.81
VIM-209ENST00000544301 APBA3O96018 575 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 TUBB2AQ13885 445 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 MEA1Q16626 185 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 KIF4BQ2VIQ3 1234 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 RABGGTAQ92696 567 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 DDX12PQ92771 950 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 GOLGA1Q92805 767 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 GJA10Q969M2 543 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 TUBB2BQ9BVA1 445 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 LRRC27Q9C0I9 530 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 KANSL2Q9H9L4 492 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 AGPAT5Q9NUQ2 364 aa20.1■□□□□ 0.81
VIM-209ENST00000544301 NKRFO15226 690 aaKnown RBP eCLIP20.09■□□□□ 0.81
VIM-209ENST00000544301 RAD21O60216 631 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 ZRANB2O95218 330 aaKnown RBP eCLIP20.09■□□□□ 0.81
VIM-209ENST00000544301 TRIM21P19474 475 aaKnown RBP20.09■□□□□ 0.81
VIM-209ENST00000544301 SLC1A4P43007 532 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 RBM5P52756 815 aaKnown RBP eCLIP20.09■□□□□ 0.81
VIM-209ENST00000544301 HDLBPQ00341 1268 aaKnown RBP20.09■□□□□ 0.81
VIM-209ENST00000544301 SRGAP1Q7Z6B7 1085 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 C2CD5Q86YS7 1000 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 GUF1Q8N442 669 aaKnown RBP20.09■□□□□ 0.81
VIM-209ENST00000544301 FHOD1Q9Y613 1164 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L15C9J2P7 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L13C9JLJ4 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L11C9JVI0 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L18D6R9N7 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L22D6RA61 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L17D6RBQ6 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L19D6RCP7 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L20D6RJB6 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 ECE2O60344 883 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 EHHADHQ08426 723 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L24Q0WX57 530 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 SLFN13Q68D06 897 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 USP17L6PQ6QN14 398 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 TMCO3Q6UWJ1 677 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 ERGIC2Q96RQ1 377 aa20.09■□□□□ 0.81
VIM-209ENST00000544301 NAP1L4Q99733 375 aaKnown RBP20.09■□□□□ 0.81
VIM-209ENST00000544301 NAPGQ99747 312 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms