RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ERGIC2Q96RQ1 377 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 TRIM34Q9BYJ4 488 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 EDEM3Q9BZQ6 932 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 PSTPIP2Q9H939 334 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 VAT1LQ9HCJ6 419 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 BLOC1S4Q9NUP1 217 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 FAM198AQ9UFP1 575 aa11.03□□□□□ -0.64
SS18-205ENST00000542420 SPDYE4A6NLX3 237 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 PP2D1A8MPX8 630 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 EDIL3O43854 480 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 CASP14P31944 242 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 OR8K1Q8NGG5 319 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 COA7Q96BR5 231 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 DUSP9Q99956 384 aaKnown RBP11.02□□□□□ -0.64
SS18-205ENST00000542420 DNAJC18Q9H819 358 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 GPCPD1Q9NPB8 672 aa11.02□□□□□ -0.64
SS18-205ENST00000542420 DDX25Q9UHL0 483 aaKnown RBP11.02□□□□□ -0.64
SS18-205ENST00000542420 ATP8B1O43520 1251 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 KIF5CO60282 957 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 PLA2G6O60733 806 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 PPP1R11O60927 126 aaPredicted RBP11.02□□□□□ -0.65
SS18-205ENST00000542420 SCNN1DP51172 638 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 MEA1Q16626 185 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 TSR1Q2NL82 804 aaKnown RBP11.02□□□□□ -0.65
SS18-205ENST00000542420 Q4G0T1 1027 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 SLFN13Q68D06 897 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 TOGARAM2Q6ZUX3 1019 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 CSGALNACT2Q8N6G5 542 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 CRYGNQ8WXF5 182 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 ZNF622Q969S3 477 aaKnown RBP eCLIP11.02□□□□□ -0.654e-7■□□□□ 10.6
SS18-205ENST00000542420 KIFC2Q96AC6 838 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 KCNMB3Q9NPA1 279 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 MTMR7Q9Y216 660 aa11.02□□□□□ -0.65
SS18-205ENST00000542420 PITPNM2Q9BZ72 1349 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 F8W031 263 aaPredicted RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 CDC25AP30304 524 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 TXKP42681 527 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 SLC1A4P43007 532 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 UBXN1Q04323 297 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 NFIAQ12857 509 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 CCDC170Q8IYT3 715 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 LRRC15Q8TF66 581 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 AMNQ9BXJ7 453 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 CPVLQ9H3G5 476 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 ZNHIT6Q9NWK9 470 aaKnown RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 TMEM260Q9NX78 707 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 TAB2Q9NYJ8 693 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 OGFRQ9NZT2 677 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 LUC7L2Q9Y383 392 aaKnown RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 MRFAP1Q9Y605 127 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 PIK3CDO00329 1044 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 MPHOSPH10O00566 681 aaKnown RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 SLC37A4O43826 429 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 TADA3O75528 432 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 EEF2P13639 858 aaKnown RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 H2AFXP16104 143 aaPredicted RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 CIITAP33076 1130 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 CCT6AP40227 531 aaKnown RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 FXR1P51114 621 aaKnown RBP eCLIP11.01□□□□□ -0.65
SS18-205ENST00000542420 ICA1Q05084 483 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 QRICH1Q2TAL8 776 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 HSP90AA4PQ58FG1 418 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 HAUS3Q68CZ6 603 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 RAD9BQ6WBX8 426 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 EHBP1Q8NDI1 1231 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 SNX29Q8TEQ0 813 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 PSMD1Q99460 953 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 NUP88Q99567 741 aaPredicted RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 TTYH3Q9C0H2 523 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 VPS16Q9H269 839 aa11.01□□□□□ -0.65
SS18-205ENST00000542420 BMP2KQ9NSY1 1161 aaPredicted RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 ARGLU1Q9NWB6 273 aaPredicted RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 RBBP6Q7Z6E9 1792 aaKnown RBP11.01□□□□□ -0.65
SS18-205ENST00000542420 POTEB2H3BUK9 544 aa11□□□□□ -0.65
SS18-205ENST00000542420 TDP2O95551 362 aa11□□□□□ -0.65
SS18-205ENST00000542420 GNA14O95837 355 aa11□□□□□ -0.65
SS18-205ENST00000542420 MUTP22033 750 aa11□□□□□ -0.65
SS18-205ENST00000542420 HNRNPH3P31942 346 aaKnown RBP11□□□□□ -0.65
SS18-205ENST00000542420 KRT9P35527 623 aa11□□□□□ -0.65
SS18-205ENST00000542420 GNG11P61952 73 aa11□□□□□ -0.65
SS18-205ENST00000542420 FAM193AP78312 1265 aa11□□□□□ -0.65
SS18-205ENST00000542420 ZBED6P86452 979 aa11□□□□□ -0.65
SS18-205ENST00000542420 CDC37Q16543 378 aaPredicted RBP11□□□□□ -0.65
SS18-205ENST00000542420 ABCB5Q2M3G0 1257 aa11□□□□□ -0.65
SS18-205ENST00000542420 FKBP15Q5T1M5 1219 aa11□□□□□ -0.65
SS18-205ENST00000542420 MTMR14Q8NCE2 650 aa11□□□□□ -0.65
SS18-205ENST00000542420 MNS1Q8NEH6 495 aa11□□□□□ -0.65
SS18-205ENST00000542420 CNOT6LQ96LI5 555 aaKnown RBP11□□□□□ -0.65
SS18-205ENST00000542420 FAM20AQ96MK3 541 aa11□□□□□ -0.65
SS18-205ENST00000542420 TSG101Q99816 390 aa11□□□□□ -0.65
SS18-205ENST00000542420 TUBGCP2Q9BSJ2 902 aa11□□□□□ -0.65
SS18-205ENST00000542420 ANO3Q9BYT9 981 aa11□□□□□ -0.65
SS18-205ENST00000542420 HAUS4Q9H6D7 363 aa11□□□□□ -0.65
SS18-205ENST00000542420 DBNDD1Q9H9R9 158 aa11□□□□□ -0.65
SS18-205ENST00000542420 MYMKA6NI61 221 aa11□□□□□ -0.65
SS18-205ENST00000542420 SOWAHDA6NJG2 315 aa11□□□□□ -0.65
SS18-205ENST00000542420 USP17L10C9JJH3 530 aa11□□□□□ -0.65
SS18-205ENST00000542420 TBC1D12O60347 775 aa11□□□□□ -0.65
SS18-205ENST00000542420 TUBBP07437 444 aa11□□□□□ -0.65
SS18-205ENST00000542420 CYP3A4P08684 503 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms