RNA–Protein interactions for RNA: ENST00000542112.5

SNHG1-219, Transcript of small nucleolar RNA host gene 1, human

TSL 3 BASIC

Gene SNHG1, Length 780 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-219	ENST00000542112	PRR12	Q9ULL5	1215 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZNF510	Q9Y2H8	683 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	TTLL3	Q9Y4R7	772 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	IKBKG	Q9Y6K9	419 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	POLR3A	O14802	1390 aa	Predicted RBP	4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	ANKRD30B	Q9BXX2	1392 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	ANKRD50	Q9ULJ7	1429 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCDC141	Q6ZP82	1450 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	MAGI2	Q86UL8	1455 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	ARHGAP5	Q13017	1502 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	DIP2B	Q9P265	1576 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	IQGAP3	Q86VI3	1631 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	TSPOAP1	O95153	1857 aa		4.85	□□□□□ -1.63
SNHG1-219	ENST00000542112	MROH1	Q8NDA8	1641 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	KDM5C	P41229	1560 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CFAP74	Q9C0B2	1584 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZFYVE16	Q7Z3T8	1539 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	C9orf84	Q5VXU9	1444 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	GOLGA6L10	A0A0M3HER8	536 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CDC14C	A4D256	554 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	FAM25E	A8MYX2	175 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112		B4DLN1	442 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	SLC27A2	O14975	620 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	WDR46	O15213	610 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	MEFV	O15553	781 aa	Predicted RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	MYO1B	O43795	1136 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	MGRN1	O60291	552 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CLASP2	O75122	1294 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	TADA3	O75528	432 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	RASSF9	O75901	435 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	DNAJC8	O75937	253 aa	Predicted RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	SMNDC1	O75940	238 aa	Known RBP eCLIP	4.84	□□□□□ -1.63	3e-14	■■■■■ 31.4
SNHG1-219	ENST00000542112	RNF8	O76064	485 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	NPTXR	O95502	500 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	IGHD	P01880	384 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	SMARCA1	P28370	1054 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ATIC	P31939	592 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	AARS	P49588	968 aa	Known RBP eCLIP	4.84	□□□□□ -1.63	5e-21	■□□□□ 9.8
SNHG1-219	ENST00000542112	HDAC4	P56524	1084 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ARPC4	P59998	168 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	UBE2H	P62256	183 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	PTPN12	Q05209	780 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ADCY1	Q08828	1119 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	SLFN5	Q08AF3	891 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	RIPK1	Q13546	671 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	MAP7	Q14244	749 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	GRIN2C	Q14957	1233 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ERCC6L	Q2NKX8	1250 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCDC144B	Q3MJ40	725 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCDC40	Q4G0X9	1142 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CMPK2	Q5EBM0	449 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCDC122	Q5T0U0	273 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZNF468	Q5VIY5	522 aa	Predicted RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	PEAR1	Q5VY43	1037 aa	Predicted RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	C9orf131	Q5VYM1	1079 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	PLA2G4D	Q86XP0	818 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	DZIP1	Q86YF9	867 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCDC144CP	Q8IYA2	1237 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCAR2	Q8N163	923 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ARHGAP18	Q8N392	663 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	VWA5B2	Q8N398	1253 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	GLIS3	Q8NEA6	775 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CFAP61	Q8NHU2	1237 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	AFAP1L1	Q8TED9	768 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	SLC35B4	Q969S0	331 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	NACC2	Q96BF6	587 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZBTB10	Q96DT7	871 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ZMAT2	Q96NC0	199 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	MPHOSPH8	Q99549	860 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	OSMR	Q99650	979 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	FUCA2	Q9BTY2	467 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	NAT10	Q9H0A0	1025 aa	Known RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CCSER2	Q9H7U1	834 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	LIN7B	Q9HAP6	207 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	LATS2	Q9NRM7	1088 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	IL20	Q9NYY1	176 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	ATXN10	Q9UBB4	475 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	CFDP1	Q9UEE9	299 aa	Predicted RBP	4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	PPM1H	Q9ULR3	514 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112	RABL2B	Q9UNT1	228 aa		4.84	□□□□□ -1.63
SNHG1-219	ENST00000542112		E9PCH4	1651 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	FRMPD1	Q5SYB0	1578 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	VWDE	Q8N2E2	1590 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	FAM135A	Q9P2D6	1515 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	RPRD2	Q5VT52	1461 aa	Known RBP	4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	NPAT	Q14207	1427 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	TRAPPC8	Q9Y2L5	1435 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	PIK3R4	Q99570	1358 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	SH3TC1	Q8TE82	1336 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	WDR33	Q9C0J8	1336 aa	Known RBP	4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	LOC102724428	A0A0B4J2F2	783 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	TMEM238L	A0A1B0GVL6	79 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	EME2	A4GXA9	379 aa	Predicted RBP	4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	TMEM110-MUSTN1	A8MSY1	372 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	SIN3B	O75182	1162 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	ATP6V1G1	O75348	118 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	STAM2	O75886	525 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	EIF2S1	P05198	315 aa	Known RBP	4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	MME	P08473	750 aa		4.83	□□□□□ -1.64
SNHG1-219	ENST00000542112	BMP4	P12644	408 aa		4.83	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms