RNA–Protein interactions for RNA: ENST00000541416.5

SNHG1-216, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 996 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-216ENST00000541416 HCN4Q9Y3Q4 1203 aa14.42□□□□□ -0.1
SNHG1-216ENST00000541416 WDR19Q8NEZ3 1342 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 LCTP09848 1927 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 PCP11498 1178 aaKnown RBP14.41□□□□□ -0.1
SNHG1-216ENST00000541416 KCNQ1P51787 676 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 RPS6P62753 249 aaKnown RBP14.41□□□□□ -0.1
SNHG1-216ENST00000541416 TAP1Q03518 808 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 ALX1Q15699 326 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 RRP12Q5JTH9 1297 aaKnown RBP14.41□□□□□ -0.1
SNHG1-216ENST00000541416 TTBK2Q6IQ55 1244 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 SLC30A10Q6XR72 485 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 AFAP1L1Q8TED9 768 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 VWCEQ96DN2 955 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 TTC14Q96N46 770 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 TMEM47Q9BQJ4 181 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 ZBED2Q9BTP6 218 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 CERS4Q9HA82 394 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 HELLSQ9NRZ9 838 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 TCP11L1Q9NUJ3 509 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 ARIH1Q9Y4X5 557 aaPredicted RBP14.41□□□□□ -0.1
SNHG1-216ENST00000541416 SCN10AQ9Y5Y9 1956 aa14.41□□□□□ -0.1
SNHG1-216ENST00000541416 FRMPD2Q68DX3 1309 aaPredicted RBP14.41□□□□□ -0.1
SNHG1-216ENST00000541416 TANC1Q9C0D5 1861 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 FGRP09769 529 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 EDNRBP24530 442 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 CHMP4BP1P59074 171 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 PTGISQ16647 500 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 RASGRP2Q7LDG7 609 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 TICAM2Q86XR7 235 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 EVI5LQ96CN4 794 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 NECAB3Q96P71 396 aaPredicted RBP14.4□□□□□ -0.1
SNHG1-216ENST00000541416 LMCD1Q9NZU5 365 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 RAPGEFL1Q9UHV5 662 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 SCN5AQ14524 2016 aa14.4□□□□□ -0.1
SNHG1-216ENST00000541416 RFXAPO00287 272 aa14.39□□□□□ -0.11
SNHG1-216ENST00000541416 EFCAB14O75071 495 aa14.39□□□□□ -0.11
SNHG1-216ENST00000541416 PDHBP11177 359 aa14.39□□□□□ -0.11
SNHG1-216ENST00000541416 GPATCH4Q5T3I0 446 aaKnown RBP14.39□□□□□ -0.11
SNHG1-216ENST00000541416 RGS22Q8NE09 1264 aa14.39□□□□□ -0.11
SNHG1-216ENST00000541416 CLEC4DQ8WXI8 215 aa14.39□□□□□ -0.11
SNHG1-216ENST00000541416 INCENPQ9NQS7 918 aa14.39□□□□□ -0.11
SNHG1-216ENST00000541416 PRRC2BQ5JSZ5 2229 aaKnown RBP14.38□□□□□ -0.11
SNHG1-216ENST00000541416 GH1P01241 217 aa14.38□□□□□ -0.11
SNHG1-216ENST00000541416 CASTP20810 708 aaKnown RBP14.38□□□□□ -0.11
SNHG1-216ENST00000541416 NT5C2P49902 561 aa14.38□□□□□ -0.11
SNHG1-216ENST00000541416 ZNF543Q08ER8 600 aa14.38□□□□□ -0.11
SNHG1-216ENST00000541416 TMEM31Q5JXX7 168 aa14.38□□□□□ -0.11
SNHG1-216ENST00000541416 SESTD1Q86VW0 696 aa14.38□□□□□ -0.11
SNHG1-216ENST00000541416 KATNAL1Q9BW62 490 aa14.38□□□□□ -0.11
SNHG1-216ENST00000541416 RNF41Q9H4P4 317 aaPredicted RBP14.38□□□□□ -0.11
SNHG1-216ENST00000541416 ABHD14A-ACY1A0A1B0GW23 586 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 FOXP2O15409 715 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 FGAP02671 866 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 SELPP16109 830 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 MFAP1P55081 439 aaKnown RBP14.37□□□□□ -0.11
SNHG1-216ENST00000541416 GRB10Q13322 594 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 MCMDC2Q4G0Z9 681 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 VPS53Q5VIR6 699 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 CNKSR3Q6P9H4 555 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 MFSD6Q6ZSS7 791 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 MCF2L2Q86YR7 1114 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 NSUN6Q8TEA1 469 aaKnown RBP14.37□□□□□ -0.11
SNHG1-216ENST00000541416 IWS1Q96ST2 819 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 CRBNQ96SW2 442 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 ZMYM6O95789 1325 aa14.37□□□□□ -0.11
SNHG1-216ENST00000541416 WDR5P61964 334 aaKnown RBP14.36□□□□□ -0.11
SNHG1-216ENST00000541416 STXBP2Q15833 593 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 DGKDQ16760 1214 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 USH1GQ495M9 461 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 CCDC178Q5BJE1 867 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 LRRC8DQ7L1W4 858 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 C7orf31Q8N865 590 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 OTUD7AQ8TE49 926 aaPredicted RBP14.36□□□□□ -0.11
SNHG1-216ENST00000541416 AFG1LQ8WV93 481 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 ESR2Q92731 530 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 COPS5Q92905 334 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 RAD9AQ99638 391 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 ABCB11O95342 1321 aa14.36□□□□□ -0.11
SNHG1-216ENST00000541416 EPOPA6NHQ4 379 aa14.35□□□□□ -0.11
SNHG1-216ENST00000541416 MMP3P08254 477 aa14.35□□□□□ -0.11
SNHG1-216ENST00000541416 SNHG28P0DPA3 235 aa14.35□□□□□ -0.11
SNHG1-216ENST00000541416 IKBKEQ14164 716 aa14.35□□□□□ -0.11
SNHG1-216ENST00000541416 SEPT14Q6ZU15 432 aa14.35□□□□□ -0.11
SNHG1-216ENST00000541416 IQCA1Q86XH1 822 aa14.35□□□□□ -0.11
SNHG1-216ENST00000541416 TGS1Q96RS0 853 aaKnown RBP14.35□□□□□ -0.11
SNHG1-216ENST00000541416 LRFN3Q9BTN0 628 aa14.35□□□□□ -0.11
SNHG1-216ENST00000541416 TRIP12Q14669 1992 aaPredicted RBP14.34□□□□□ -0.11
SNHG1-216ENST00000541416 HSPD1P10809 573 aaKnown RBP14.34□□□□□ -0.11
SNHG1-216ENST00000541416 RBL2Q08999 1139 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 KRT40Q6A162 431 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 GDF6Q6KF10 455 aaPredicted RBP14.34□□□□□ -0.11
SNHG1-216ENST00000541416 CCDC62Q6P9F0 684 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 CHST3Q7LGC8 479 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 DGKHQ86XP1 1220 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 PPP1R13LQ8WUF5 828 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 RMDN3Q96TC7 470 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 GTF2IRD1Q9UHL9 959 aa14.34□□□□□ -0.11
SNHG1-216ENST00000541416 MRPL11Q9Y3B7 192 aaKnown RBP14.34□□□□□ -0.11
SNHG1-216ENST00000541416 EIF3JO75822 258 aaKnown RBP14.33□□□□□ -0.12
SNHG1-216ENST00000541416 ARIH2O95376 493 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms