RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 IGFLR1Q9H665 355 aa11.36□□□□□ -0.59
YBX3-211ENST00000541351 PIH1D3Q9NQM4 214 aaKnown RBP11.36□□□□□ -0.59
YBX3-211ENST00000541351 HOMER2Q9NSB8 354 aa11.36□□□□□ -0.59
YBX3-211ENST00000541351 TET1Q8NFU7 2136 aa11.36□□□□□ -0.59
YBX3-211ENST00000541351 C5orf67F2Z3F1 127 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 DLX2Q07687 328 aaPredicted RBP11.35□□□□□ -0.59
YBX3-211ENST00000541351 ADAM15Q13444 863 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 MTMR3Q13615 1198 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 ACAP1Q15027 740 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 PPP2R5BQ15173 497 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 ASTLQ6HA08 431 aaPredicted RBP11.35□□□□□ -0.59
YBX3-211ENST00000541351 CLEC10AQ8IUN9 316 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 FIBCD1Q8N539 461 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 HAUS7Q99871 368 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 A1CFQ9NQ94 594 aaKnown RBP11.35□□□□□ -0.59
YBX3-211ENST00000541351 PDGFCQ9NRA1 345 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 DLL3Q9NYJ7 618 aa11.35□□□□□ -0.59
YBX3-211ENST00000541351 B4DLN1 442 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 F5H6K3 240 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 NBNO60934 754 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 SRGAP2BP0DMP2 458 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 CKBP12277 381 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 CLCN5P51795 746 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 MRPL12P52815 198 aaKnown RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 RRP1P56182 461 aaKnown RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 CHMP4BP1P59074 171 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 KLRC3Q07444 240 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 DDX10Q13206 875 aaKnown RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 OS9Q13438 667 aaPredicted RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 TTF1Q15361 905 aaPredicted RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 KIAA0319Q5VV43 1072 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 RPAP2Q8IXW5 612 aaPredicted RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 KIAA2013Q8IYS2 634 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 MSLNLQ96KJ4 702 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 RIOK1Q9BRS2 568 aaKnown RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 KATNAL1Q9BW62 490 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 PLVAPQ9BX97 442 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 DCP1AQ9NPI6 582 aaPredicted RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 INCENPQ9NQS7 918 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 ATP8A2Q9NTI2 1148 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 RNF146Q9NTX7 359 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 SALL2Q9Y467 1007 aaPredicted RBP11.34□□□□□ -0.59
YBX3-211ENST00000541351 MYO15AQ9UKN7 3530 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 SCN10AQ9Y5Y9 1956 aa11.34□□□□□ -0.59
YBX3-211ENST00000541351 PTPRSQ13332 1948 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 A6NJR5 290 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 CDK8P49336 464 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 COL9A2Q14055 689 aaPredicted RBP11.33□□□□□ -0.6
YBX3-211ENST00000541351 TNNI3KQ59H18 835 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 ZC3H14Q6PJT7 736 aaKnown RBP11.33□□□□□ -0.6
YBX3-211ENST00000541351 LRRC47Q8N1G4 583 aaKnown RBP11.33□□□□□ -0.6
YBX3-211ENST00000541351 EFHBQ8N7U6 833 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 C7orf31Q8N865 590 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 MORC4Q8TE76 937 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 SCFD2Q8WU76 684 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 TOP1MTQ969P6 601 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 IL17RAQ96F46 866 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 SYNPO2Q9UMS6 1093 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 NR2E1Q9Y466 385 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 USP15Q9Y4E8 981 aaPredicted RBP11.33□□□□□ -0.6
YBX3-211ENST00000541351 FPGT-TNNI3KV9GXZ4 949 aa11.33□□□□□ -0.6
YBX3-211ENST00000541351 EP300Q09472 2414 aaPredicted RBP11.33□□□□□ -0.6
YBX3-211ENST00000541351 NAV1Q8NEY1 1877 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 MMP1P03956 469 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 BMPR1AP36894 532 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 PTK7Q13308 1070 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 C16orf86Q6ZW13 317 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 CHURC1Q8WUH1 139 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 SEPT8Q92599 483 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 CHAMP1Q96JM3 812 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 TRERF1Q96PN7 1200 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 DBNDD2Q9BQY9 259 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 IFIH1Q9BYX4 1025 aaKnown RBP11.32□□□□□ -0.6
YBX3-211ENST00000541351 API5Q9BZZ5 524 aaKnown RBP11.32□□□□□ -0.6
YBX3-211ENST00000541351 NYAP2Q9P242 653 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 SORCS3Q9UPU3 1222 aa11.32□□□□□ -0.6
YBX3-211ENST00000541351 MYH8P13535 1937 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 NDUFB10O96000 172 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 STAT2P52630 851 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 PDE4BQ07343 736 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 IKQ13123 557 aaPredicted RBP11.31□□□□□ -0.6
YBX3-211ENST00000541351 GPNMBQ14956 572 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 ALDH1L2Q3SY69 923 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 NAALADL2Q58DX5 795 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.31□□□□□ -0.61e-9■■■■■ 31
YBX3-211ENST00000541351 FAM160B2Q86V87 743 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 GPR161Q8N6U8 529 aaKnown RBP11.31□□□□□ -0.6
YBX3-211ENST00000541351 TMEM105Q8N8V8 129 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 RUBCNQ92622 972 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 DYNLL2Q96FJ2 89 aa11.31□□□□□ -0.6
YBX3-211ENST00000541351 NUP88Q99567 741 aaPredicted RBP11.31□□□□□ -0.6
YBX3-211ENST00000541351 ISY1Q9ULR0 285 aaKnown RBP11.31□□□□□ -0.6
YBX3-211ENST00000541351 RBM47A0AV96 593 aaKnown RBP11.3□□□□□ -0.6
YBX3-211ENST00000541351 UPP2O95045 317 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 ALAS1P13196 640 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 CASTP20810 708 aaKnown RBP11.3□□□□□ -0.6
YBX3-211ENST00000541351 DMWDQ09019 674 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 GDF6Q6KF10 455 aaPredicted RBP11.3□□□□□ -0.6
YBX3-211ENST00000541351 DBF4BQ8NFT6 615 aa11.3□□□□□ -0.6
YBX3-211ENST00000541351 SDR42E1Q8WUS8 393 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms